Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00080 ATGCAAGCAGATAATGGCAAATTATTTGTTGGTGGAATATCATGGGATACAAATGAAGAGAGACTCAGGGAGTATTTTAGTTCTTTTGGGGAGGTCATTGAATCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTTGGTTTCGTCGTCTTTTCTGATCCAGGTGTTGCTGAAAGAGTGATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCTAAGGATGACCAGAACATAATTAGTAGAAACAGTGGCAGTGTACATGGTTCTCCAGGACCATGCCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTCACAGAGAGTGATTTCAAAAAGTACTTTGATCAGTTTGGGACCATAACAGATGTTGTTGTGATGTATGACCACAACACTCAGAGACCAAGAGGGTTTGGATTTATCACCTATGATTCTGAGGAAGCTGTTGACACAGTCTTACTCAAGACTTTCCATGAATTGAATGGTAAAATGGTCGAGGTCAAGCGGGCAGTTCCTAAGGAGCTATCACCAGGACCAAACCATAGCCCCCTTGGTGGATATAACTATGGTCTTAGTAGGGTCAATGGTTTCTTAAATGGTATCACTCAGGGATATACTCCAAGTAATGTTGGAGGGTATGGACTTCGAGTGGATGGTAGATTTAGTCCTTTTGCTAATGGTCGAACTGGATTTGCTCCATTTGGTTCTGGTTTGAACCCTGAATTTGGGGGAAATGCAAATTTCAATAGTAATCTTAGCTATGGCCGAGGATTAAACCCTTATTATATCGACAATTCAAACAGATTTGGCAGTTCTATTGCGTATGATGGTGGTAATGGAGGAAGCAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGGAATGGTGGCCTTAGTTATGGAACAAGCTCTGCTAATTCCAGTGCATACCTTGGATCAGGAAGTGGGAGAGTTGGAGGAAACACATTTGGCAATACTGGAGTCAGCTGGGATTCTTCATCAATTTCTGTTCAAGGGGTAGGGAACAATGCACCACAAAGTAATGGCAACCTTGGCTTTGGAGGTGCCAACAACAATTATGGTTTGGGGACTGGAGGGTATGGAAGAAGCAATGGTACCGATATACCCCCAACATCATCATACTCAGTGTCAAACGGTGGTTTTGATGGGACTTTTTCTGAATTTTACAATGGAAGTTCAGATTATGGTGACCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGATCTGGTCCCTTTGGTTATATACTTGGCGGTACAGCTTCAGATGTTCCTGCCAAAAGTTCTCCAGGTTATGTTGGAGGTTATACAGTTAACAAGAGGCAGCCAAATAGGGGAATTGCTACATAG 1407 0.4271 MQADNGKLFVGGISWDTNEERLREYFSSFGEVIESVIMKDRTTGRARGFGFVVFSDPGVAERVIKEKHNIDGRMVEAKKAVPKDDQNIISRNSGSVHGSPGPCRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDTVLLKTFHELNGKMVEVKRAVPKELSPGPNHSPLGGYNYGLSRVNGFLNGITQGYTPSNVGGYGLRVDGRFSPFANGRTGFAPFGSGLNPEFGGNANFNSNLSYGRGLNPYYIDNSNRFGSSIAYDGGNGGSNSFFSSVTRNLWGNGGLSYGTSSANSSAYLGSGSGRVGGNTFGNTGVSWDSSSISVQGVGNNAPQSNGNLGFGGANNNYGLGTGGYGRSNGTDIPPTSSYSVSNGGFDGTFSEFYNGSSDYGDPTWRSSNSERDGSGPFGYILGGTASDVPAKSSPGYVGGYTVNKRQPNRGIAT* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00080 468 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Rops10g00080 468 MobiDBLite consensus disorder prediction 413 428 - -
Rops10g00080 468 Gene3D - 103 189 IPR012677 -
Rops10g00080 468 SMART rrm1_1 107 179 IPR000504 GO:0003723
Rops10g00080 468 SMART rrm1_1 7 78 IPR000504 GO:0003723
Rops10g00080 468 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 464 - -
Rops10g00080 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Rops10g00080 468 CDD RRM2_Hrp1p 107 184 - -
Rops10g00080 468 Gene3D - 4 88 IPR012677 -
Rops10g00080 468 SUPERFAMILY RNA-binding domain, RBD 104 203 IPR035979 GO:0003676
Rops10g00080 468 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Rops10g00080 468 MobiDBLite consensus disorder prediction 413 468 - -
Rops10g00080 468 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Rops10g00080 468 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Rops10g00080 468 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Rops10g00080 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Rops10g00080 468 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00080 Rops-Chr10 2536691 2542799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00080 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 28.788 3.09e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00080 K14411 - gmx:100795907 789.26