Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00078 ATGGTGTACGGAATGGAGCAAAGTGCCATTTTAAAGATGTCGGAACTCAAAGTCAAGGGGCTGTGGAGTGGCCTGGAAGATTTATACTCAGACAGCTTCATCGTCCTGCTGGGGGTTGTGGAGTGGCCTGGAAGATTTATACTTGGACAACTTCATTGTCCGGGTGAGGACTTGAAGCTGGGGGGCTATGCATGGGCTAGGCCAAACAGGGCCAAGACCAAGCTCAAAGCCCTACTCCTCAGCCTTCAGGAGTCTTCTCCAAAAATGCTCCCTCCGTCTCAGCAATCGCAGCTACAAACATCATTATCTCTAGTTTCTTCGGATCCTCGCCTCTCTCCTGATGATCCTAGATCAAACTCTGACAATCTCCGTGAATCTCCAACTGAAAGTGCTAGTTCTCAGGAAACTTGGCCTACAGCTGATGCAACCGCAGCAAAGAAGATGGAGAATAGAAAAGCTGAGATTAATGGCCTTGAGCAGTCAGTTATTCATCGTGTTTCTAGTGCAGACAAAATTACTCTTCAGGACATTGCAAGAGAAAATGTTGATATAATCTCTGAAAAAATGCATCGTCTTCCTGAGGAATTTCTAGAGGAGCTGAAAAATGGACTTCGAGTTATCCTTGAGGGAGGAAATGGTTTGCAGCATAGAGAGGAATTTTTCATTTTGCAGAAGCTTGTACAGAGTAGAACTGATTTAACAGCCAAGACACTAATGAGAGCACATCGTGTACAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGGATTTTTGCATCCTAGCATCAGTCTATCACAGACTTCCCTAGTTGAAATTTTTGGGTATAAGAGATGCAGAAACATAGCATGCCAAAACCAGCTTCCTGCTGATGATTGTACCTGTGATATATGCACCAACAATAATGGTTTCTGCAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTGAACACATGCCGGTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGATTGTGCCATTCGTGAGCAACTAATTTGCATGGGCCCTTCTGTGAAGAGTGGAGCTGGACCAAGTGAAATGGTTTATAGATGTCAAGCATGCAATAGGACATCAGAACTGTTGGGTTGGGTTAAAGATGTTTTCCAGCACTGTGCACCATCTTGGGACGGAGAGGCCTTCACAAGGGAACTTGATTATGTGAGTAAGATCTTTCATATTAGTAAAGACCCCCGTGGGAGGAAACTATTTTGGAAGTGTGATGATCTCAAGGAAAAACTGAAAAGTAGAAAAATGGACTCAAAGGCTGCTTGCAGGGCAATATTGATGCTTTTCCAAGAGCTTGAGATAGACTCTCCAAATGGCCTGGAAAATGGAGAAAGTGGAAGGTTGGTTGCTCCACAGGATGCATGCAATAGAATTGCTGAAGTGGTGCAGGAGGCTATAAGAAAGATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTAGATTGGCTCTTGATGCTTGTGATCGAGAACTAGCAGACAAGGCCAGGGAAGTGGCAGACCTCAAGATGGACAGGCAAAAAAAGAAGTTGCAGATAGAAGAACTTGAGAAAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAATTCAAGGCTGATGAGGCTAAAAGAGAGGCTGAGAGGCTTCAGAGGATTGCACTTGCCAAGCAAGATAAATCAGAGGAAGAGTTTACTAGCAACTACCTGAAACAACGATTGAATGAGGCTGAGGCTGAGAAGCAATATCTGTATGAGAAGATCAAATTGCAGGAGAGTTCTCGTGTTTCGCAAAGCAGTAATGGTGGTGACCCCTCTCAAATGCTGATGTATTCCAAAATTTATGATCTGCTGTACAATGCTCCTTCCAAGGCAGACACTCAGCCTAATTTGCGCCACCCTTTCCGGACAAATCCATGA 1959 0.4385 MVYGMEQSAILKMSELKVKGLWSGLEDLYSDSFIVLLGVVEWPGRFILGQLHCPGEDLKLGGYAWARPNRAKTKLKALLLSLQESSPKMLPPSQQSQLQTSLSLVSSDPRLSPDDPRSNSDNLRESPTESASSQETWPTADATAAKKMENRKAEINGLEQSVIHRVSSADKITLQDIARENVDIISEKMHRLPEEFLEELKNGLRVILEGGNGLQHREEFFILQKLVQSRTDLTAKTLMRAHRVQLEILVAINTGIQGFLHPSISLSQTSLVEIFGYKRCRNIACQNQLPADDCTCDICTNNNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSVKSGAGPSEMVYRCQACNRTSELLGWVKDVFQHCAPSWDGEAFTRELDYVSKIFHISKDPRGRKLFWKCDDLKEKLKSRKMDSKAACRAILMLFQELEIDSPNGLENGESGRLVAPQDACNRIAEVVQEAIRKMEMVADEKMRMFKKARLALDACDRELADKAREVADLKMDRQKKKLQIEELEKIVRLKNAEADMFQFKADEAKREAERLQRIALAKQDKSEEEFTSNYLKQRLNEAEAEKQYLYEKIKLQESSRVSQSSNGGDPSQMLMYSKIYDLLYNAPSKADTQPNLRHPFRTNP* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00078 652 PIRSF UCP025218 78 640 - -
Rops10g00078 652 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 245 260 IPR004082 -
Rops10g00078 652 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 230 245 IPR004082 -
Rops10g00078 652 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 390 409 IPR004082 -
Rops10g00078 652 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 271 292 IPR004082 -
Rops10g00078 652 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 572 594 IPR004082 -
Rops10g00078 652 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 317 337 IPR004082 -
Rops10g00078 652 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 188 210 IPR004082 -
Rops10g00078 652 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 533 553 IPR004082 -
Rops10g00078 652 MobiDBLite consensus disorder prediction 123 140 - -
Rops10g00078 652 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 93 633 IPR004082 -
Rops10g00078 652 SMART PHD_3 310 370 IPR001965 -
Rops10g00078 652 MobiDBLite consensus disorder prediction 86 108 - -
Rops10g00078 652 MobiDBLite consensus disorder prediction 86 140 - -
Rops10g00078 652 Coils Coil 504 573 - -
Rops10g00078 652 CDD PHD_OBE1_like 310 369 IPR047578 -
Rops10g00078 652 Pfam Coiled-coil region of Oberon 498 631 IPR032535 -
Rops10g00078 652 Pfam PHD - plant homeodomain finger protein 280 403 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00078 Rops-Chr10 2511636 2518345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00078 280 382 PHD Gene Family AT5G57380 30.769 1.69e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00078 - - gmx:100781890 1001.89