Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00068 ATGGAGAAAATACCTGGGATTGAAGAAGCTGCTGAGCAACCAGCTTTACCTCCACCACCTCCTGATGTAACACCTAATATGGAAACAGAACAAATGGCTCCTACAAAGTATTCTATTATCAGTAGGCCGGGGATTGGGACCACAGGAAAGCGCATACCTTTGCTTGCCAATCTCTTCAAAGTTGCTGCTAATGCTCCAGATGCAATTTTTTTCCAGTATAGTGTTACTATTGCTTCAGAAGATGAAAGAGCTGTTGAAAACAAGGGCATTTGTAGAAAACTGATTGATAAGCTTTACCAGACATACTCTTCTGAACTTGATGGCAAAAGGTTTGCATATGATGGAGAGAGAACTTTGTACACAGTGGGTCCTCTGCCTCAGAATAAATTTGAGTTCAAAGTATTGCTTGAGGAATCATTTGCAAAGCGCAGTAGCACTGAGAGTCCTGGTGCTAATGGAAGCCCTCGTGAGGAAGCTAAAAGGTCAAAACGTTCTTTTCAGTCAAAGGCATTCATGGTGGTGATAAGTTTTGCTGCCAAAATACCCCTTCAGTCCATTGCTCTTTCCCTCAAAGGGATCGAGTCAGATGCTAATTGTCAGGATGCTTTGAGAGTGCTTGATATCGTACTGAGGCAGCAAGCAGCTAACAGAGGATGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCGAGAAATTTCACTGATGTTGGAGGTGGAGTGACAAGGGTTCAAGGTTTTCATTCCAGTTTTCGTCTTATACAGGGAGGATTGTCTCTTAATATGGATGTGTCCACAACAATGATCTTGAAACCTGGACCTGTAATTGATTTTCTCCTATCCAACCAGAATGTGAAGGAACCTCGTTATATTGACTGGGCAAAGGCCAAAAAAGTGCTTAAAAATTTAAGGGTGCGTGCAACACACCTTAACCAGGAATTTAAAATTTCTGGCCTGAGTGAGAAACCCTGCATTCAGCAACTTTTTAGTATGAAGGTGAAAAATGGAGACAAAGATAATGGAGAGCAGACAGTGGATGTTACCGTATATGAGTATTTTGCTAAGCACCGTGGCATAGAGCTGACCTCTTCTGCTTATCTTCCATGTCTTGACGTCGGGAAGCCAAAACGGCCCAACTATTTGCCCTTGGAGCTTTGTTCGCTTGTTTCCCTCCAACGGTATACAAAGGCATTATCTCCAATGCAAAGAACATCTTTAGTTGAAAAATCACGCCAAAAGCCTCAAGATAGAATCAAAATTCTGACAACTGCTGTAGGAAATTATTGCTACAACGATGACCCCGTTCTTGCTGCGTGTGGCATTTCTATTGATAAGCAATTGACTCAGGTTGAAGGCCGGGTTCTTGAGACACCAAAGTTGAAGGTTGGTAAGAATGATGACTGCTTCCCCCATAATGGAAGGTGGAACTTTAATAAAAAGACACTTCTACAACCATCCCATATTGATTTTTGGGCTGTTGTCAACTTTTCTGCACGTTGTGATACTAGTTACATTACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGCATTAACATTGAACGACCGTATACTTTAATAGAAGAAGAACCACAGTTGAGAAGATCTAACCCTGTTGCAAGGGTTGAGAAGATGTTTGACCTGCTAACATCAAAACTTACTAAAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAATTGTGACATTTATGGACCTTGGAAAAAGAAGTGTCTTAGTGAAGTTGGTGTTGTCACACAGTGCATTTCCCCTCTCAAGATCACTGATCAATACCTTACTAACGTGCTACTCAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGCTGACAATAGAGCATTCTGGGCGTCTTCCCCTGATCAATGATACCCCAACAATGATTTTGGGGATGGATGTCTCTCATGGTCACCCTGGTCAGTCAGATATTCCGTCAATAGCAGCGGTTGTTGGATCTCGACGTTGGCCTCTGATTTCAAGGTATAGAGCATCTGTTAGAACACAGTCATCTAAGGTGGAGATAATTGATGCTCTATACAAGCCTTTGGATAATGGGAATGATGATGGTATTATCAGAGAATTGCTTCTAGATTTCTATGATTCAAGTAATGGACGCAAACCAACTCAAATTATTGTCTTCAGGGATGGAGTTAGCGAATCACAATTTAATCAGGTTTTGAATATTGAGCTTAACCAGATAATAAAGGCCTATCAACATCTTGGGGAGATTGATGTTCCCAAATTCACCGTAATTGTGGCACAGAAGAAACATCACATGAAGTTGTTTCAAGCTAATTCTCTGGAAAATGTTCCTCCTGGGACAGTTGTTGACACAAAAATTGTGCATCCAAGAAATTATGATTTCTACATGTGTGCTCATGCTGGCATCATTGGAACTTCTAGGCCTGTACATTATAATGTATTACTTGATGAGATTGGTTTCACGCCAGATGGCATGCAAAATTTGATCCATTCGCTGTGTTATGTGAACCAAAGGAGCACAATTGCAACCTCAATTGTGGCACCTATACACTATGCCCACCATGCTGCAGCTCAGATGGGACAATTTTTGAATTTTGATGATTTATCAGAAACAACTTCAAATCTTTCTTCAGAGGGAAATGTCCCCATCCCAGAGCTTCCAAGGTTGCACAAGAATGTCAGGAGTTCTATGTTCTTCTGTTGA 2712 0.4108 MEKIPGIEEAAEQPALPPPPPDVTPNMETEQMAPTKYSIISRPGIGTTGKRIPLLANLFKVAANAPDAIFFQYSVTIASEDERAVENKGICRKLIDKLYQTYSSELDGKRFAYDGERTLYTVGPLPQNKFEFKVLLEESFAKRSSTESPGANGSPREEAKRSKRSFQSKAFMVVISFAAKIPLQSIALSLKGIESDANCQDALRVLDIVLRQQAANRGCLLVRQSFFHDDSRNFTDVGGGVTRVQGFHSSFRLIQGGLSLNMDVSTTMILKPGPVIDFLLSNQNVKEPRYIDWAKAKKVLKNLRVRATHLNQEFKISGLSEKPCIQQLFSMKVKNGDKDNGEQTVDVTVYEYFAKHRGIELTSSAYLPCLDVGKPKRPNYLPLELCSLVSLQRYTKALSPMQRTSLVEKSRQKPQDRIKILTTAVGNYCYNDDPVLAACGISIDKQLTQVEGRVLETPKLKVGKNDDCFPHNGRWNFNKKTLLQPSHIDFWAVVNFSARCDTSYITRELIKCGMSKGINIERPYTLIEEEPQLRRSNPVARVEKMFDLLTSKLTKEPKLILCVLPERKNCDIYGPWKKKCLSEVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLTIEHSGRLPLINDTPTMILGMDVSHGHPGQSDIPSIAAVVGSRRWPLISRYRASVRTQSSKVEIIDALYKPLDNGNDDGIIRELLLDFYDSSNGRKPTQIIVFRDGVSESQFNQVLNIELNQIIKAYQHLGEIDVPKFTVIVAQKKHHMKLFQANSLENVPPGTVVDTKIVHPRNYDFYMCAHAGIIGTSRPVHYNVLLDEIGFTPDGMQNLIHSLCYVNQRSTIATSIVAPIHYAHHAAAQMGQFLNFDDLSETTSNLSSEGNVPIPELPRLHKNVRSSMFFC* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00068 903 FunFam Protein argonaute 3 627 903 - -
Rops10g00068 903 SUPERFAMILY Ribonuclease H-like 543 867 IPR012337 -
Rops10g00068 903 Gene3D paz domain 266 394 - -
Rops10g00068 903 Gene3D - 626 903 IPR036397 GO:0003676
Rops10g00068 903 SMART Piwi_a_2 559 867 IPR003165 GO:0003676
Rops10g00068 903 Pfam Piwi domain 559 866 IPR003165 GO:0003676
Rops10g00068 903 Pfam N-terminal domain of argonaute 50 210 IPR032474 -
Rops10g00068 903 ProSiteProfiles Piwi domain profile. 559 867 IPR003165 GO:0003676
Rops10g00068 903 FunFam Protein argonaute 7 267 394 - -
Rops10g00068 903 Gene3D - 454 620 - -
Rops10g00068 903 Pfam PAZ domain 276 406 IPR003100 GO:0005515
Rops10g00068 903 CDD PAZ_argonaute_like 272 389 - -
Rops10g00068 903 ProSiteProfiles PAZ domain profile. 297 390 IPR003100 GO:0005515
Rops10g00068 903 SMART DUF1785_2 220 272 IPR014811 -
Rops10g00068 903 MobiDBLite consensus disorder prediction 144 163 - -
Rops10g00068 903 Pfam Argonaute linker 1 domain 222 269 IPR014811 -
Rops10g00068 903 SUPERFAMILY PAZ domain 267 430 IPR036085 GO:0005515
Rops10g00068 903 CDD Piwi_ago-like 434 861 IPR045246 -
Rops10g00068 903 Pfam Argonaute linker 2 domain 417 461 IPR032472 -
Rops10g00068 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 32 869 - -
Rops10g00068 903 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00068 Rops-Chr10 2340794 2351407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00068 5 903 Eukaryotic Initiation Factors Gene Family AT1G48410 36.533 1.18e-170 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00068 K11593 - gmx:100778875 1479.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g00068 10 2340794 2351407 Rops10g00068 10 2340794 2351407 ECH
Rops2g03715 2 68788494 68800640 Rops10g00068 10 2340794 2351407 PCT