Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00054 ATGAGCATTATCAAGGTATTGAGGAGGGTTAAAGTAAGTAACCAAGAAGCAGTCCGGCGTGTGGAAGAAGAGGATGATTTCTATGGTGTGAATCAATTTCTAAAAACACATGGGCTTGAATTTGATAATAAATTCGAGCTTGATATATATTTGAAAGAAGAATTGGTGTCCAACAAGTTGAGTGACTTCAATATTTTAAATTGGTGGAATGTCAACTCACCTAGATTTCCCACCCTTGCAAAGATTGCTCGGGAGGTGTTAGCCATTCCTGTCTCTACTGTAGCATTAGAAGCTGCATTTAGTACTGGAGGAAGGAAGGTATATGATCATGACTTCTTGTCAGCTGATGATATAATGGGAGAAGCAGAGATTGATCTTCAGCCTCTGATAACATCTGCAATTGCATTTGGAGATGCTGGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCCATGACAATGCACTCTAA 477 0.3899 MSIIKVLRRVKVSNQEAVRRVEEEDDFYGVNQFLKTHGLEFDNKFELDIYLKEELVSNKLSDFNILNWWNVNSPRFPTLAKIAREVLAIPVSTVALEAAFSTGGRKVYDHDFLSADDIMGEAEIDLQPLITSAIAFGDAGMFDDMQIGKWLKSHDNAL* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00054 158 PANTHER BED FINGER-RELATED 42 108 IPR045259 -
Rops10g00054 158 Pfam hAT family C-terminal dimerisation region 46 110 IPR008906 GO:0046983
Rops10g00054 158 SUPERFAMILY Ribonuclease H-like 41 107 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00054 Rops-Chr10 1983500 1984791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00054 106 158 C2H2 Transcription Factor Family AT4G21160 81.132 1.73e-24 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00054 K12486 - jre:108988811 99.7525