Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g00045 ATGTCGAGCTGCAGCATCGATGTTGCCCCTGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAACATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCCTCTTTGACATCGTTACTGTTCGATGTGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCAGCGATTCAGTCACTGTCATGGCAAGATGTTCAGGCACCCAGCTACACCAATCCACATTGTAGGATTGACACTGGCTCAACTTCTAAATGCAACAAGATTCAAATGCATGCACCCACAACCCGTGTAACTGAAGAAAGGGTAGTGAACCGGCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAAAGGATCAAGGCCAATAATCCTGATATTAATCACAGGGAAGCATTCAGTACGGCTGCGAAGAACTGGGCACATTTCCCTCACATTCATTTTGGGCTGATGTTGGAAAGCAACAATCAAGCAAAGATGGAGAATGGCTCTGACAAGCATTTGATGTCAAAGGCTGCGCTATTGAACAAATGA 558 0.4677 MSSCSIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAIQSLSWQDVQAPSYTNPHCRIDTGSTSKCNKIQMHAPTTRVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDINHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENGSDKHLMSKAALLNK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g00045 185 CDD HMG-box_SF 112 148 - -
Rops10g00045 185 FunFam axial regulator YABBY 5-like 96 154 - -
Rops10g00045 185 Gene3D High mobility group box domain 96 154 IPR036910 -
Rops10g00045 185 PANTHER PROTEIN YABBY 6-RELATED 1 168 IPR006780 GO:0007275
Rops10g00045 185 SUPERFAMILY HMG-box 102 151 IPR036910 -
Rops10g00045 185 Pfam YABBY protein 9 158 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g00045 Rops-Chr10 1785127 1789158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g00045 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 77.160 4.65e-89 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Rops10g00045 YABBY 2.1e-68 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g00045 K25796 - gmx:100499942 346.665