Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2707 ATGTGTGGAGGAGCTATTATCTCTGACTTCATTCCGGCGGCGGTCACGGCCAGGTCTCGCCGGGTCACCGCCGATTACCTGTGGCTGGATTTGAAGAAGCGGGCATCTCAGGTCATCCACTCCGACGATGACTTCGAGGCTGATTTTAGGAATTTCAAGGACGATTCCGACAGCGACGCCGACCACCAAGTCAAACCCTTTGCTTTCTCCGCCTCTTCTCGGCCGGCAGTGAAATCTGTGGCATTCAATGGTGGAGCTGAGAAGTCTGCAAAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTGAAATCAGGGATCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAGGAAGCTTCCGTGAAACATTCTAAGGTAAATCAACTGGGAAATCAGAAGACTGTTCAACCCAATGTCCACATGTTCAATGCTGGGAACAATCAGAAGGACCTTTGTTGTCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAACCAGTTTGCTGACATGGGTTCCTTCTCTAGCAGTGGAAATGGGCTCAGATCTCTTTCTTCGACTGATGATGTCACCCTTTACTTCAGTTCAGATCAGGGGAGTAATTCATTTGATTATGCAGATCTTGGGTGGAGTGAACAGGCCCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGCGATTCTCATTTTGTACAGGAAGCGAACCATCAGACTAATTCTCAGGATGTGGTATCTATGCAAGATGATTCTTCCAAGACACTATCTGAGGAGCTCGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCTTATCTTGAAGGGAGCTGGGATGATACTTCATTGGAATCCTTGCTATCTTGTGATACAACCCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1068 0.4775 MCGGAIISDFIPAAVTARSRRVTADYLWLDLKKRASQVIHSDDDFEADFRNFKDDSDSDADHQVKPFAFSASSRPAVKSVAFNGGAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEASVKHSKVNQLGNQKTVQPNVHMFNAGNNQKDLCCPMDLVEQKPLVNQFADMGSFSSSGNGLRSLSSTDDVTLYFSSDQGSNSFDYADLGWSEQAPKTPEISSMLSAPLDCDSHFVQEANHQTNSQDVVSMQDDSSKTLSEELVDIESELKFFQMPYLEGSWDDTSLESLLSCDTTQDGGNLMNLWSFDDIPSMAGGVF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2707 355 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Pvu9g2707 355 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Pvu9g2707 355 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Pvu9g2707 355 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Pvu9g2707 355 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Pvu9g2707 355 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Pvu9g2707 355 PANTHER EREBP TRANSCRIPTION FACTOR 1 349 - -
Pvu9g2707 355 PANTHER DNA-BINDING DOMAIN 1 349 IPR044808 GO:0003700|GO:0009873
Pvu9g2707 355 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Pvu9g2707 355 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2707 Pvu-Chr9 37365318 37367770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2707 1 355 AP2-EREBP Transcription Factor Family AT1G53910 45.614 4.51e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu9g2707 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2707 K09286 - gmx:100170723 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2707 9 37365318 37367770 Pvu10g1298 10 39467544 39470639 PCT