Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2686 ATGGACTTGATACAACAAGTTAAAGGCAATTATTCTGATAGCAGGGAGGAAGAGGAGGAAGAGGAAGTGGCAGAGATTATGGGTATCACCAGAGAAGCAGAAAGCAGCAGGTTACACCACCAAGATGCCGCATCCAATTTTGGAAAGAAGCTAGACCTGATGGAGTTGTCACTCGGGAGCACCAAGGAAGAGGAAAGGGAGCGCAATTTGCAACATCATCAGCATCATCATCAGCATCCACAACAGCAGCAGCATGAACATCATCAACAACATCATCACGAGGGTCCCGGGACTTGTTCAAACGCGAAGGAAGCAGTGGAGAAAGAGCAGATGTTTGAGAAAGTGGTGACACCGAGCGATGTGGGGAAGCTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGTACTTCCCCCTTGATTCCTCGTCCAACGAGAAGGGTCTGCTCCTGAATTTCGAGGACCGGAATGGGAAGGTGTGGCGGTTCAGATACTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTTGATGCAGGCGACACCGTCTCCTTCCAGCGTGGTCTCGGCGATATGTATAGACATAGGTTGTACATAGATTGGAGGAGAAGAACCGATCATGCTCATCCTCCCTCTGACCCCTCAGCTTCCCCTTTGTTTCTTCCCTCCATCAGATGGTACTCCCTTCCCGCCACCTCCCCCATCGCGCCACCCCGCTACCACCACGATCACCACTTTCACCATCTCAATTACAGCAACCTCTTCACTTTTCAGCACCAACACCAGTACCTCGGCCATGTTCATGGTGCTGCCGCCACCGCTGCTTCTCATCATCACAACAACTACGGCGAGCATAATTCGGGATCTGGGCCTGGCTCACTCTATTACCTCAGGTCAATGGGTGGTGGTGGTGATCAAAACATGGGAGGGAGAGGGAACAGCATTGTACCCATGATCATCGATTCTGTGCCGGTCAACGTGGGTCACCATAACCACCGCCATGGGCATGGCGGAATGGCGAGTGGCGGAGGTAGTGCCACCACAAGCAGTGGAAAACGACTGAGGCTATTTGGGGTGAACATGGAGTGTGCCTCTTCGGCCGAAGATTCTAGAAGCTTGTCCTTGGGTTCGGGAGGTCACGTGACAGTGGGAAATTCTCTTCCTTCTTCTTCTTCGTCTCTACAGCAACGTCTGAGGATTCCCCATGAAGACCCCCTTTCTTCTTCAGCAAGGTTTGGGGATCACAAAGGAGGTAGCGGGACTTCTCTGCTGTTCGATTTGGATCCCTCCTTGCAGTAG 1335 0.5228 MDLIQQVKGNYSDSREEEEEEEVAEIMGITREAESSRLHHQDAASNFGKKLDLMELSLGSTKEEERERNLQHHQHHHQHPQQQQHEHHQQHHHEGPGTCSNAKEAVEKEQMFEKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTVSFQRGLGDMYRHRLYIDWRRRTDHAHPPSDPSASPLFLPSIRWYSLPATSPIAPPRYHHDHHFHHLNYSNLFTFQHQHQYLGHVHGAAATAASHHHNNYGEHNSGSGPGSLYYLRSMGGGGDQNMGGRGNSIVPMIIDSVPVNVGHHNHRHGHGGMASGGGSATTSSGKRLRLFGVNMECASSAEDSRSLSLGSGGHVTVGNSLPSSSSSLQQRLRIPHEDPLSSSARFGDHKGGSGTSLLFDLDPSLQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2686 444 SUPERFAMILY DNA-binding pseudobarrel domain 110 215 IPR015300 -
Pvu9g2686 444 Gene3D - 105 223 IPR015300 -
Pvu9g2686 444 SMART B3_2 112 217 IPR003340 GO:0003677
Pvu9g2686 444 Pfam B3 DNA binding domain 112 216 IPR003340 GO:0003677
Pvu9g2686 444 CDD B3_DNA 111 199 IPR003340 GO:0003677
Pvu9g2686 444 MobiDBLite consensus disorder prediction 1 24 - -
Pvu9g2686 444 MobiDBLite consensus disorder prediction 396 444 - -
Pvu9g2686 444 MobiDBLite consensus disorder prediction 60 100 - -
Pvu9g2686 444 MobiDBLite consensus disorder prediction 83 98 - -
Pvu9g2686 444 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 63 397 - -
Pvu9g2686 444 MobiDBLite consensus disorder prediction 396 410 - -
Pvu9g2686 444 ProSiteProfiles B3 DNA-binding domain profile. 112 217 IPR003340 GO:0003677
Pvu9g2686 444 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 63 397 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2686 Pvu-Chr9 37260825 37263156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2686 102 378 RAV Transcription Factor Family AT2G46870 50.883 3.17e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu9g2686 B3 1.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2686 - - vun:114162133 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2686 9 37260825 37263156 Pvu10g1259 10 39055760 39058494 PCT