Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2681 ATGGACGCCTACTCCTCTGGAGAAGAAGTGGTTATTAAGACACGAAAACCATATACTATCACAAAGCAAAGAGAACGATGGACGGAGGAGGAACATAATAGATTTCTAGAAGCCTTAAAGCTATACGGGAGAGCATGGCAGCGAATAGAAGAGCACATAGGAACGAAGACTGCTGTGCAAATCAGAAGTCACGCTCAGAAATTCTTTTCAAAGGTAAATCCGTACCCTCTCTCCTTGGATTTTACATTGAAAGTTGTGGTCCTATAA 267 0.4195 MDAYSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKVNPYPLSLDFTLKVVVL* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2681 88 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Pvu9g2681 88 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Pvu9g2681 88 PANTHER PROTEIN LHY 2 72 - -
Pvu9g2681 88 PANTHER SWI/SNF COMPLEX-RELATED 2 72 - -
Pvu9g2681 88 SMART sant 23 71 IPR001005 -
Pvu9g2681 88 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Pvu9g2681 88 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Pvu9g2681 88 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Pvu9g2681 88 Gene3D - 26 72 - -
Pvu9g2681 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Pvu9g2681 88 CDD SANT 26 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2681 Pvu-Chr9 37192487 37194049 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu9g2681 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2681 K12133 - pvu:PHAVU_009G259600g 180.644