Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2664 ATGGCGTCGATGCGGAGGAGCGTGTTGCGGACGCGCGACTGCGCCAGGTCAAGCTCGCGGACCTTGCGGCTGACCTGGTCAGCGAGGTCGGAGAAAAGAAAAAGGTGTGACTTAAAACAAAGCACACCCATTTTCCTGAACTCAAGTGTTAGTGTAGCACATCAGAGGCTAAACATGGCACCTAATGCCACTTTCTTTCTCTCACTCACATCTTCTTCCTTACCCTTTCCCTTATTCAACCACAATCTCCATACCCAATTCACATCTTCTCACAAACCATTCATTTCCTTTTCCAAGGCTACGACTTTCTCCTTCACCGCCTCGCCGGCCACGGTGGATAAAGCAAGGGTCGTTCACGGAGGAAAACATGCGGAGAAAGAAGCGTTCAAGCAACCAAGACCAACCGAAGTCTACATCTGCAACCTTCCCAGTAGCTGTGACGTACAGCATCTACTTCACATGTTCAACCCCCATGGAACCGTACTTTCTGCTCAGGTTTCCCGGAGTGAGGAGAGTGGTAAGAGTAGAGGGAGTGCTTATGTGACAATGGCATCTATTGACTCCGCAAAGAAAGCAATTGATGCATTGGACGCATCGGATGTTGGTGGGCGTGAAGTGCTGGTTAGATTTTCAGCTGAGATGAATCCCAAGAGGAGGGATCTTGACACAATGAATTCGTTACCCATTAGAACTATGTACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAAGTTTACTGTGCCTGAAGACCTGAGAGAGGTTTTTGGCAGATTTGGTAATGTGACTAGTGTAAGGATGTTGCATGATATGAGACAAGGGAAACAAAGGGTCTATGCGTTTGTCTCCTATCTTTCAGAGAGAGAGCGTGATGCAGCAATGTCTCTCCATGGAACGGTGCTTTGTGGTCGAACACTGGTGATTCGAGAGCGTGTAAAGAGAGAAGAATAA 957 0.4754 MASMRRSVLRTRDCARSSSRTLRLTWSARSEKRKRCDLKQSTPIFLNSSVSVAHQRLNMAPNATFFLSLTSSSLPFPLFNHNLHTQFTSSHKPFISFSKATTFSFTASPATVDKARVVHGGKHAEKEAFKQPRPTEVYICNLPSSCDVQHLLHMFNPHGTVLSAQVSRSEESGKSRGSAYVTMASIDSAKKAIDALDASDVGGREVLVRFSAEMNPKRRDLDTMNSLPIRTMYYEGPHKLYVGNLSKFTVPEDLREVFGRFGNVTSVRMLHDMRQGKQRVYAFVSYLSERERDAAMSLHGTVLCGRTLVIRERVKREE* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2664 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 315 IPR000504 GO:0003723
Pvu9g2664 318 SUPERFAMILY RNA-binding domain, RBD 131 225 IPR035979 GO:0003676
Pvu9g2664 318 SUPERFAMILY RNA-binding domain, RBD 233 316 IPR035979 GO:0003676
Pvu9g2664 318 Gene3D - 230 318 IPR012677 -
Pvu9g2664 318 CDD RRM_SF 240 311 - -
Pvu9g2664 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Pvu9g2664 318 SMART rrm1_1 239 311 IPR000504 GO:0003723
Pvu9g2664 318 SMART rrm1_1 136 209 IPR000504 GO:0003723
Pvu9g2664 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 308 IPR000504 GO:0003723
Pvu9g2664 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 206 IPR000504 GO:0003723
Pvu9g2664 318 PANTHER OS02G0815200 PROTEIN 59 318 - -
Pvu9g2664 318 CDD RRM_SF 137 209 - -
Pvu9g2664 318 Gene3D - 107 225 IPR012677 -
Pvu9g2664 318 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 59 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2664 Pvu-Chr9 37054907 37057045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2664 135 318 Eukaryotic Initiation Factors Gene Family AT3G16380 29.101 9.52e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2664 - - pvu:PHAVU_009G258000g 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1245 10 38843458 38845922 Pvu9g2664 9 37054907 37057045 PCT