Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu9g2657 | ATGTCAGAAGGTGCAGAAATTGATGAGCGAGTGGACCTTGATGAGGAAAATTTTATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAGGAACATGATGAATATGAGGATTCAACAGCAGAGGTTGGTGGGAAGGACCATTTACCTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGTGATGATGATCAAAAACCGTCTTTCATTGATGAAGATGAGAAAGAGAAGCATGACGAACTTCTTGCCCTTCCACCTCATGGTTCGGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGATTTGTGCGAGCCGGTGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGAGAAAACAAGGGTTATGCCTTTGTTGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCAATAGAGGAGATACATAGCAGGGAATTTAAGGGGAAAACATTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACGGAAGATGACTTTAGGAAAGTCATTGAAGGAGTTGGTCCTGGAGTTGAAAACATCGAGCTCATAAAGGACCCTCAAAATCCAAGTAGGAATCGTGGATTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCAAGCTTTAAGCTGGATGGTAATACCCCCACTGTCACATGGGCAGATCCGAAGAACTCTCCTGATCATTCTGCTTCTTCGCAGGTAAAAGCTCTGTACGTCAAAAACATACCAGAAAATGTTACCACTGACCAACTGAAGGAACTATTCCGTCGTCATGGCGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACTGAGAAATATGAAATTGATGGACAACTACTTGAAGTTGTTCTTGCCAAACCTCAAGCTGATAAAAAACCAGATGGAGGGTATGGCTACAATCCTGGACTGCATTCAAACCATCTTCCTCATCCTGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGGTGGTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCGGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAAGCGCCACCTAGCAGACCTCGCAGAATTGAACGGAGTAATGGTCCAAGTGGGCAGCCAGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG | 1470 | 0.434 | MSEGAEIDERVDLDEENFMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHDEYEDSTAEVGGKDHLPEAEKSDIATEFGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRDLCEPVGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSREFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQLLEVVLAKPQADKKPDGGYGYNPGLHSNHLPHPAYGNFSGNPYGSLGAGYGVGGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQAPPSRPRRIERSNGPSGQPGRGGGGGGGGGGSGNDEGNRSRRYRPY* | 490 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu9g2657 | 489 | Gene3D | - | 8 | 187 | IPR012677 | - | |
Pvu9g2657 | 489 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 282 | 359 | IPR000504 | GO:0003723 | |
Pvu9g2657 | 489 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 107 | 185 | IPR000504 | GO:0003723 | |
Pvu9g2657 | 489 | Gene3D | - | 188 | 268 | IPR012677 | - | |
Pvu9g2657 | 489 | MobiDBLite | consensus disorder prediction | 56 | 87 | - | - | |
Pvu9g2657 | 489 | SUPERFAMILY | RNA-binding domain, RBD | 276 | 374 | IPR035979 | GO:0003676 | |
Pvu9g2657 | 489 | CDD | RRM_SF | 109 | 181 | - | - | |
Pvu9g2657 | 489 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
Pvu9g2657 | 489 | PANTHER | GEO13361P1-RELATED | 2 | 487 | - | - | |
Pvu9g2657 | 489 | MobiDBLite | consensus disorder prediction | 8 | 55 | - | - | |
Pvu9g2657 | 489 | CDD | RRM3_hnRNPR_like | 281 | 359 | - | - | |
Pvu9g2657 | 489 | Gene3D | - | 271 | 408 | IPR012677 | - | |
Pvu9g2657 | 489 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 269 | IPR000504 | GO:0003723 | |
Pvu9g2657 | 489 | MobiDBLite | consensus disorder prediction | 439 | 489 | - | - | |
Pvu9g2657 | 489 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q | 2 | 487 | - | - | |
Pvu9g2657 | 489 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 109 | 179 | IPR000504 | GO:0003723 | |
Pvu9g2657 | 489 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 255 | IPR000504 | GO:0003723 | |
Pvu9g2657 | 489 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 284 | 352 | IPR000504 | GO:0003723 | |
Pvu9g2657 | 489 | SUPERFAMILY | RNA-binding domain, RBD | 104 | 270 | IPR035979 | GO:0003676 | |
Pvu9g2657 | 489 | SMART | rrm1_1 | 188 | 265 | IPR000504 | GO:0003723 | |
Pvu9g2657 | 489 | SMART | rrm1_1 | 283 | 355 | IPR000504 | GO:0003723 | |
Pvu9g2657 | 489 | SMART | rrm1_1 | 108 | 181 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu9g2657 | Pvu-Chr9 | 37007108 | 37013305 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu9g2657 | 109 | 413 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 26.453 | 5.57e-17 | 82.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu9g2657 | K13161 | - | gmx:100790907 | 836.639 |