Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2657 ATGTCAGAAGGTGCAGAAATTGATGAGCGAGTGGACCTTGATGAGGAAAATTTTATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAGGAACATGATGAATATGAGGATTCAACAGCAGAGGTTGGTGGGAAGGACCATTTACCTGAAGCAGAAAAAAGTGACATTGCCACTGAATTTGGTGATGATGATCAAAAACCGTCTTTCATTGATGAAGATGAGAAAGAGAAGCATGACGAACTTCTTGCCCTTCCACCTCATGGTTCGGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGATTTGTGCGAGCCGGTGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACTGGAGAAAACAAGGGTTATGCCTTTGTTGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCAATAGAGGAGATACATAGCAGGGAATTTAAGGGGAAAACATTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACTTGGACGGAAGATGACTTTAGGAAAGTCATTGAAGGAGTTGGTCCTGGAGTTGAAAACATCGAGCTCATAAAGGACCCTCAAAATCCAAGTAGGAATCGTGGATTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAGATGTCAAGTGCAAGCTTTAAGCTGGATGGTAATACCCCCACTGTCACATGGGCAGATCCGAAGAACTCTCCTGATCATTCTGCTTCTTCGCAGGTAAAAGCTCTGTACGTCAAAAACATACCAGAAAATGTTACCACTGACCAACTGAAGGAACTATTCCGTCGTCATGGCGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACTGAGAAATATGAAATTGATGGACAACTACTTGAAGTTGTTCTTGCCAAACCTCAAGCTGATAAAAAACCAGATGGAGGGTATGGCTACAATCCTGGACTGCATTCAAACCATCTTCCTCATCCTGCATATGGTAACTTTTCTGGAAATCCTTATGGCTCTTTAGGGGCTGGATATGGTGTTGGTGGTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCGGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAAGCGCCACCTAGCAGACCTCGCAGAATTGAACGGAGTAATGGTCCAAGTGGGCAGCCAGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG 1470 0.434 MSEGAEIDERVDLDEENFMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHDEYEDSTAEVGGKDHLPEAEKSDIATEFGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRDLCEPVGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHSREFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQLLEVVLAKPQADKKPDGGYGYNPGLHSNHLPHPAYGNFSGNPYGSLGAGYGVGGGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQAPPSRPRRIERSNGPSGQPGRGGGGGGGGGGSGNDEGNRSRRYRPY* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2657 489 Gene3D - 8 187 IPR012677 -
Pvu9g2657 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 359 IPR000504 GO:0003723
Pvu9g2657 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Pvu9g2657 489 Gene3D - 188 268 IPR012677 -
Pvu9g2657 489 MobiDBLite consensus disorder prediction 56 87 - -
Pvu9g2657 489 SUPERFAMILY RNA-binding domain, RBD 276 374 IPR035979 GO:0003676
Pvu9g2657 489 CDD RRM_SF 109 181 - -
Pvu9g2657 489 MobiDBLite consensus disorder prediction 1 87 - -
Pvu9g2657 489 PANTHER GEO13361P1-RELATED 2 487 - -
Pvu9g2657 489 MobiDBLite consensus disorder prediction 8 55 - -
Pvu9g2657 489 CDD RRM3_hnRNPR_like 281 359 - -
Pvu9g2657 489 Gene3D - 271 408 IPR012677 -
Pvu9g2657 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 269 IPR000504 GO:0003723
Pvu9g2657 489 MobiDBLite consensus disorder prediction 439 489 - -
Pvu9g2657 489 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 487 - -
Pvu9g2657 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Pvu9g2657 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 255 IPR000504 GO:0003723
Pvu9g2657 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 352 IPR000504 GO:0003723
Pvu9g2657 489 SUPERFAMILY RNA-binding domain, RBD 104 270 IPR035979 GO:0003676
Pvu9g2657 489 SMART rrm1_1 188 265 IPR000504 GO:0003723
Pvu9g2657 489 SMART rrm1_1 283 355 IPR000504 GO:0003723
Pvu9g2657 489 SMART rrm1_1 108 181 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2657 Pvu-Chr9 37007108 37013305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2657 109 413 Eukaryotic Initiation Factors Gene Family AT1G71770 26.453 5.57e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2657 K13161 - gmx:100790907 836.639