Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2629 ATGGCACACGACTTAACGGGGCAGCTTGTGAGTTCAGAGATACATGGGTTTCATACCTTGCAGGATCTGGAAGTTACTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATGCTCAGTAATCACAAATATTTCAAGATTAATGCCAAGCCAGTGCATTTACCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGAAACTTCAGAAAAGATGGTCACAATTGGAAAAAGAAAAGTGATGGGAAAACTGTTAAAGAAGCTCACGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCATGTATACTATGCACATGGCCTAGACAACCCAACCTTCGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTTTGGAGCACATAGTCCTCGTTCATTATCGTGAAACAAAAGAGATACAATTGCAAAGTTCTCCTGTTACACCTGTAAATTCAAATTCAAATTCAAGTTCTGTCTCTGATCCAGCTGCATCTTGGATTCCATCAGAAGACTTAGATTCTGGGACGAAAAGTGATTACAGTCCTGAGCTTAATGTCAATTTAACAGTCAGAAGTTATGAACAGAAGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTTCAAATGCCAACACTTCTACTACATCTAGTGGAGGCAATGTTCCACGTTCAAATAACCAAAATCAAAGTTTACTGAGTGGAAACTTTGGCAATGCATCCAGTACTCCTTCAGCAGAAGTTCCTTCTTTAGGTAATATAACTCACTCAGTTTCTGGGAGCAACGGTGTTCCTTACGGTTTCTCTGAAACTATTAATCTGCTTAAAAATAGTCCTACATCTCCCTGTGGCGTTGATACCTTGGGCACTTTGGTCAATGAAGGCTTGCAAAGTCAGGACAGCTTTGGAATGTGGATGAACAACATCATATCAGATAAACCGTGTTCCATGGACGAGTCAGCTCTTGAAACATCGATTTCTTCTGTTCATGAACCATATTCATCACTGGTGGCAGATAATCAGCTATCTTCTCTGCCTGATCAAGTATTTAATCTCACAGAGGTGTCCCCTGCGTGGGCATCTTCCACTGAAAAAACAAAGGTCCTGGTAACTGGATATTTTCATAGTAACTATCAACACCTTGCAAAGCTCAACCTAGTGTGTGTCTGTGGTGATGTAAGTTTTCCTGTAGAAATTGTTCAGGTTGGGGTTTACCGATGCTGGGTACCACCACACTCCCCTGGATTGGTCAATATCTATTTGAGCTTTGATGGCCACAAGCCTATTAGCCATGTTGTTAATTTTGAGTATCGTACTCCCATTTTGCACGATCCAACTGCTGCAATGGAAGAGAAATACAACTGGAATGAATTTCGACTTCAGATGAGGCTTGCGCATTTGCTCTTTTCTACAGACAAGACCCTTGATATTTTCTCTAGCGTAGTATCACCAAATGCAGTAAAAGAGGCTAGAAGATTTTCCTTCAAAACATCATTTATCTCCAAAAGCTGGCAATACTTGTTGAAGTCAATTGATGACAAAACAACTCCATTTTCACAAGTAAAAGATAGCTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTAGAACGAATTATTGTAGGCTGCAAGAGTACTGAATATGATGCTCAAGGGCAAGGTGTAATTCATTTGTGTGCAGTACTTGGATATGATTGGGCAATCACCTTATTTTCTTGGTCAGGCTTGTCGCTAGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCTTATTATGGAATGGAGAAAATGGTTGCAACTCTGCTGTCTGCTGGGGCAAGGCCAAACGTGGTCACAGATCCTACTCCGCAAAATCCTGGTGGATGTACTGCTGCTGATCTTGCTTTTATGAACGGCTTTGATGGCTTAGCTGCTTACCTTTCCGAAAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATCTCAGTGGCACACTAGAAACTGCTTTAACTGATCCAGTAAATACTGAAGACCTCACTGAGGACCAGATGTACTTAAAGGATACATTGGCAGCTTATCGAGTGGCTGCTGGGGCCGCAGCACGCATTCAAGCTGCATATAGGGAGCATTCTCTAAATTTAAAATACAAGGCAGTTGAATTTAGCAGTCCAGAGGATCAAGCACGTCATATAGTAGCAGCAATGAGGATTCAACACGCCTTTCGCAAGTATGAGACAAGGAGATCAAATGCAGCTGCTGTTCGAATTCAGCATAGATTCCTTACACGGAAACACCGTAGAGAATTTCTGAACATGCGGCGTCAGGCTATTAAAATTCAAGCTGCTTTCAGGGGGTTTCAAGTCCGGAGGCAATATAAAAAAATCATATGGTCTGTTGGGGTGCTAGAGAAAGCAATTCTGCGATGGCGGTTAAAGAGAAAAGGCTTCCGTGGTCTCCAGGTTAATTCTGCTGAGGATGGGAAGCAGGAAGAGGGTGCAGAGGAGGATTTCTTTAGGACCGGCCTGAAACAAGCCGAAGAACGTGTCGAGAGGTCTGTCGTACGTGTGCAGGCCATGTTCCGATCTAAGAAAGCACAAGAAGAATATAGAAGAATGAAGCTAGCATATAGTCAAGCAAAGCTGGATCTGGAAGTTGAAGATTTCATCTCTTCTGAAGTTGACCTGTTATCCGACATATAG 2736 0.4189 MAHDLTGQLVSSEIHGFHTLQDLEVTNTMEEAKSRWLRPNEIHAMLSNHKYFKINAKPVHLPESGTIVLFDRKMLRNFRKDGHNWKKKSDGKTVKEAHEHLKVGNEERIHVYYAHGLDNPTFVRRCYWLLDKSLEHIVLVHYRETKEIQLQSSPVTPVNSNSNSSSVSDPAASWIPSEDLDSGTKSDYSPELNVNLTVRSYEQKLHEINTLEWDDLVVSNANTSTTSSGGNVPRSNNQNQSLLSGNFGNASSTPSAEVPSLGNITHSVSGSNGVPYGFSETINLLKNSPTSPCGVDTLGTLVNEGLQSQDSFGMWMNNIISDKPCSMDESALETSISSVHEPYSSLVADNQLSSLPDQVFNLTEVSPAWASSTEKTKVLVTGYFHSNYQHLAKLNLVCVCGDVSFPVEIVQVGVYRCWVPPHSPGLVNIYLSFDGHKPISHVVNFEYRTPILHDPTAAMEEKYNWNEFRLQMRLAHLLFSTDKTLDIFSSVVSPNAVKEARRFSFKTSFISKSWQYLLKSIDDKTTPFSQVKDSLFEIALKNKLKEWLLERIIVGCKSTEYDAQGQGVIHLCAVLGYDWAITLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSAGARPNVVTDPTPQNPGGCTAADLAFMNGFDGLAAYLSEKSLVEQFNDMSLAGNLSGTLETALTDPVNTEDLTEDQMYLKDTLAAYRVAAGAAARIQAAYREHSLNLKYKAVEFSSPEDQARHIVAAMRIQHAFRKYETRRSNAAAVRIQHRFLTRKHRREFLNMRRQAIKIQAAFRGFQVRRQYKKIIWSVGVLEKAILRWRLKRKGFRGLQVNSAEDGKQEEGAEEDFFRTGLKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAYSQAKLDLEVEDFISSEVDLLSDI* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2629 911 SMART iq_5 860 882 IPR000048 GO:0005515
Pvu9g2629 911 SMART iq_5 783 805 IPR000048 GO:0005515
Pvu9g2629 911 MobiDBLite consensus disorder prediction 150 172 - -
Pvu9g2629 911 Gene3D - 760 808 - -
Pvu9g2629 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 907 - -
Pvu9g2629 911 MobiDBLite consensus disorder prediction 150 187 - -
Pvu9g2629 911 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Pvu9g2629 911 Coils Coil 874 894 - -
Pvu9g2629 911 Gene3D - 522 666 IPR036770 -
Pvu9g2629 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 15 907 - -
Pvu9g2629 911 ProSiteProfiles Ankyrin repeat region circular profile. 597 626 - -
Pvu9g2629 911 SMART ANK_2a 636 667 IPR002110 GO:0005515
Pvu9g2629 911 SMART ANK_2a 597 626 IPR002110 GO:0005515
Pvu9g2629 911 SUPERFAMILY Ankyrin repeat 536 659 IPR036770 -
Pvu9g2629 911 SUPERFAMILY E set domains 361 448 IPR014756 -
Pvu9g2629 911 Pfam IQ calmodulin-binding motif 786 805 IPR000048 GO:0005515
Pvu9g2629 911 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Pvu9g2629 911 SMART CG_1_2 29 146 IPR005559 GO:0003677
Pvu9g2629 911 MobiDBLite consensus disorder prediction 222 254 - -
Pvu9g2629 911 Gene3D Immunoglobulins 356 451 IPR013783 -
Pvu9g2629 911 ProSiteProfiles IQ motif profile. 784 808 IPR000048 GO:0005515
Pvu9g2629 911 ProSiteProfiles IQ motif profile. 862 890 IPR000048 GO:0005515
Pvu9g2629 911 Pfam Ankyrin repeats (3 copies) 539 626 IPR002110 GO:0005515
Pvu9g2629 911 ProSiteProfiles Ankyrin repeat profile. 597 629 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2629 Pvu-Chr9 36734077 36745918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2629 29 894 CAMTA Transcription Factor Family AT3G16940 55.006 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Pvu9g2629 CG-1 5.9e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2629 K21596 - gmx:100819198 1460.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2629 9 36734077 36745918 Pvu9g2629 9 36734077 36745918 ECH
Pvu3g1162 3 28187173 28194709 Pvu9g2629 9 36734077 36745918 PCT