Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2600 ATGTGTGGAGGTGCAATTATTTCAGACTTCATTGGTGTCAAGCGTGGCCGCAACCTCCCCAAGCAGCAACTCTGGTCGGAGCTAGACCCTTACTCTGACCTCCTCGGCTTCGACTACTCCTCCGCCACCAACGCCGCCACCGCCGCCGCTACTTCCAAACTACCCCTCCCCGTAATCCCAGATAAAAAAGTGGAATCATGTGAGAAGAAGAAGAAAAGTGTGGGTGCTGCAGCAGCAGCAGCAGGGAAGAAGAGCGAGCGTGCTCGCAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGAAAATGGGCTGCAGAAATAAGGGACCCACACAAGGGTGTCCGCGTCTGGCTCGGCACCTTCTCCACCGCCGAGGAAGCCGCCAGAGCCTACGACACCGCCGCCAAACGCATCCGCGGCGACAAGGCCAAACTCAACTTCCCCGCCGCCACTCCGCCGCCCTCCAAGAAACGCTGCCTCAGCCCCGACCTCCCCCAACAGAGCAGCTCAGCCTCCACCGCACCGCCGCCTTCCTCAGCCTCCTACGGCGGAGACAGCAGCGGAGGAGAGGAACTCGACCTGAAACAACTCGAACTGTTTCTCGGCTTGGAGAACGAGCAGCTTCTGCCCAACAATGGTGTCGAGTGGGACAACGGTTACATGATGGATGACTTGTGGATGCTCGACGACGTCGTTGTGACCAACCATGACCTAGTTTATTAG 726 0.5826 MCGGAIISDFIGVKRGRNLPKQQLWSELDPYSDLLGFDYSSATNAATAAATSKLPLPVIPDKKVESCEKKKKSVGAAAAAAGKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFSTAEEAARAYDTAAKRIRGDKAKLNFPAATPPPSKKRCLSPDLPQQSSSASTAPPPSSASYGGDSSGGEELDLKQLELFLGLENEQLLPNNGVEWDNGYMMDDLWMLDDVVVTNHDLVY* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2600 241 PANTHER DNA-BINDING DOMAIN 1 170 IPR044808 GO:0003700|GO:0009873
Pvu9g2600 241 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Pvu9g2600 241 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Pvu9g2600 241 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Pvu9g2600 241 MobiDBLite consensus disorder prediction 144 190 - -
Pvu9g2600 241 MobiDBLite consensus disorder prediction 162 186 - -
Pvu9g2600 241 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Pvu9g2600 241 Gene3D AP2/ERF domain 92 151 IPR036955 GO:0003700|GO:0006355
Pvu9g2600 241 PANTHER EREBP TRANSCRIPTION FACTOR 1 170 - -
Pvu9g2600 241 CDD AP2 93 151 IPR001471 GO:0003700|GO:0006355
Pvu9g2600 241 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Pvu9g2600 241 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2600 Pvu-Chr9 36449776 36451645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2600 1 235 AP2-EREBP Transcription Factor Family AT3G16770 42.537 2.59e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu9g2600 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2600 K09286 - gmx:100817253 268.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2600 9 36449776 36451645 Pvu9g2600 9 36449776 36451645 ECH
Pvu3g1120 3 26813958 26815094 Pvu9g2600 9 36449776 36451645 PCT