Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2588 ATGGCTCAAGAGGGAGGAGATGAAGCGACACCAAGATTCAGAGAGAGAAACCCAATCCATGAAGATTTGGACGAGAAGACTTACAGTCTCAGGGGAAAAATCATGCTCTCAGCGATCGTTCTACTCTTCTTCATCGTCATTTTAATGCTCTGTCTCCACATCTACGCGCGCTGGTACCTCAGACGCGCGCGCCGCCGTCAGCTCCGCCGCCACCGCGAGTTCCGCCGTACGCAGCTCATGTTCTCCAGCGCCGCTCCCACCGCCGCCGCGGTCTCCCGCGGCCTCGACGCCGCTGTCCTCGCCTCGCTGCCCGTGTTCACTTACGACCCCAAGGCACACCCGGAAAACGCGCCGGAATGCGCGGTCTGCTTGTCGGAGTTCGAACTGGGCGAACCGGGCCGGATCTTGCCGAAGTGTAACCACAGCTTCCACACGGAATGCATCGACATGTGGTTTCACTCGCACGCCACGTGTCCGCTCTGTCGCGCACCGGTCGAGCGCACGGCTGAACCGGAAGTTGTTGTAACAGTAGACGAACCGGAATCCGGTTCGGGTGAGACCCCAACCGGTTCTGCATCTTCTCCTTCCTCTTCGGTTGGTACGAGGAAATCTTCGTTGGTTGGTGTAACCGTTGAGGTGCCTCCGCGGGACGAGAATTTGCGTGACGAGAATTCGACGTCGTTTCGGTCGCCGATGAGTCGCATGTTGTCGTTTACGAGGATTCTGAGCAGGGAACGGAGGGGGAACGTGTCGCCGTCGTCTTGCGGCGGTGACTGTAGCTCCGCCGCCCAGTGCGACGCGGAGCGAGGTGGGCGCGAGGAGACTCAGTGA 831 0.5993 MAQEGGDEATPRFRERNPIHEDLDEKTYSLRGKIMLSAIVLLFFIVILMLCLHIYARWYLRRARRRQLRRHREFRRTQLMFSSAAPTAAAVSRGLDAAVLASLPVFTYDPKAHPENAPECAVCLSEFELGEPGRILPKCNHSFHTECIDMWFHSHATCPLCRAPVERTAEPEVVVTVDEPESGSGETPTGSASSPSSSVGTRKSSLVGVTVEVPPRDENLRDENSTSFRSPMSRMLSFTRILSRERRGNVSPSSCGGDCSSAAQCDAERGGREETQ* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2588 276 MobiDBLite consensus disorder prediction 182 205 - -
Pvu9g2588 276 Pfam Ring finger domain 119 162 IPR001841 -
Pvu9g2588 276 SUPERFAMILY RING/U-box 100 167 - -
Pvu9g2588 276 CDD RING-H2_EL5_like 119 162 - -
Pvu9g2588 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 26 192 - -
Pvu9g2588 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 170 IPR013083 -
Pvu9g2588 276 MobiDBLite consensus disorder prediction 244 260 - -
Pvu9g2588 276 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Pvu9g2588 276 PANTHER RING-H2 FINGER PROTEIN ATL64 26 192 - -
Pvu9g2588 276 MobiDBLite consensus disorder prediction 178 276 - -
Pvu9g2588 276 SMART ring_2 120 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2588 Pvu-Chr9 36352671 36354000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2588 26 273 Rapid Response to Elicitors AT3G16720 51.579 8.01e-71 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2588 - - gmx:100791545 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2588 9 36352671 36354000 Pvu9g2588 9 36352671 36354000 ECH
Pvu3g1112 3 26725475 26726766 Pvu9g2588 9 36352671 36354000 PCT