Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2549 ATGTTCAATAAACTCCTCTGCTTGAAATGTGTCACTTCCACAGCAACATCATGTTACCCTTTTATCCAAAACTACCCATTGCCCTTTTCTCTGCGTTTCTTCACAACCACTTCAAAATCACGCTCATTTGCGGTATCCTATCTCACTGACAACTTTGGGTTCTCCCCTGATTCTGCTTCCAAAATCTCTAACTCCTACAATATTTGTTTCCAGACCCCAGAAAAGCCCGAGTCAGTGATCATGTTCTTCAGAAATCGCGGTTTCTCTAATTCCCAAATTAATCAAATGGTTAGAAAGGTACCATGGTTGCTTTCCTGTGACCCCTGCAAAAGGGTATTGCCAAAGTTTGATTTTTTACTCTCAAAGGGTGTTTCTAGCTCTGAAATTGTTGACCAAGTGAGTAAGAACCCTGGAATACTGGGTCCAAGCTTGAAGAATCATATAGTTCCAACCTATGAATTGATATATAAATTCTTGCAATCTGATGCAAAGACTGTTGGTTGTATCTTTGGTAATTCATTTTTCTCATACGGGGATCGTCTAGCACGCAACATCAGATTGCTGCAAGAGAATGGAGTGAGAGAATCAAACATTGCAAGATTGCTTGGGAACCGTAGTAAAGAGGTGTTTATCTCAAATGATATGGTTAAGTTGGTGAAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAAACAACTTTTGCTGTAGCAATGATGGCCTTGAAAAGAACGAGTCCTTCCATGTGGAAGGAGAAAGTTGATACCTTCAAGAAATGGGGTTGGTCTGATGAAGCCTTTTCTGAAGCATTTAGGAGGCACCCTCACTGCATGTTGACCTCCATTGAAAAAATAAATGTTGTTATGAACCTTTGGGTCAATCAGTTGGGTTGGGATGCTTTGGACCTTGTTCGAGGTCCAAAGATTTTCGGGTTGAGTATGGAGAAGACACTTGTTCCAAGGGCTCGTGTTGTTCAGCATTTACTTGCTAAGGGCTTGAGGAACAACAGTACCAGCTTTCTTACCCCGTTTTGGGTTTCTGAAAAGGTGTTTCTTGAGAAGTTTGTGACATGTTTTAAGGAGGAATCACGTCAACTATTAAAGCTGTACCAGGAAAAAGTCAGTGTTCGAGGAAAAGAGGAGGTTGGTGCAGCATGGTGCAGTTCTCAAATGGTTAACTCATGA 1182 0.412 MFNKLLCLKCVTSTATSCYPFIQNYPLPFSLRFFTTTSKSRSFAVSYLTDNFGFSPDSASKISNSYNICFQTPEKPESVIMFFRNRGFSNSQINQMVRKVPWLLSCDPCKRVLPKFDFLLSKGVSSSEIVDQVSKNPGILGPSLKNHIVPTYELIYKFLQSDAKTVGCIFGNSFFSYGDRLARNIRLLQENGVRESNIARLLGNRSKEVFISNDMVKLVKEVKDLGFDPSKTTFAVAMMALKRTSPSMWKEKVDTFKKWGWSDEAFSEAFRRHPHCMLTSIEKINVVMNLWVNQLGWDALDLVRGPKIFGLSMEKTLVPRARVVQHLLAKGLRNNSTSFLTPFWVSEKVFLEKFVTCFKEESRQLLKLYQEKVSVRGKEEVGAAWCSSQMVNS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2549 393 Pfam mTERF 246 350 IPR003690 GO:0003690|GO:0006355
Pvu9g2549 393 Pfam mTERF 81 226 IPR003690 GO:0003690|GO:0006355
Pvu9g2549 393 Gene3D Transcription termination factor 3, mitochondrial 172 368 IPR038538 -
Pvu9g2549 393 Gene3D Transcription termination factor 3, mitochondrial 58 171 IPR038538 -
Pvu9g2549 393 PANTHER CGI-12 PROTEIN-RELATED 17 378 IPR003690 GO:0003690|GO:0006355
Pvu9g2549 393 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 17 378 - -
Pvu9g2549 393 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Pvu9g2549 393 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Pvu9g2549 393 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Pvu9g2549 393 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2549 Pvu-Chr9 36016711 36018422 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu9g2549 mTERF 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2549 K15032 - gmx:102663414 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1078 3 25564970 25566145 Pvu9g2549 9 36016711 36018422 PCT