Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2548 ATGGAAGATAGCTATGGAGGCAGTTCCTCCAAGGACAAGAACTGCAGCATCAAGGAACAAGACCGGTTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCAGATTTTGCCACAGAATGCAAAAATCTCCAAGGAAGCAAAAGAGACAATGCAAGAATGTGTGTCGGAGTTCATAAGCTTTGTGACAAGTGAAGCTTCGGAGAAGTGCAGAAAGGAGAGGAGAAAGACAGTGAATGGTGATGACATTTGCTGGGCATTGTCTACACTAGGATTTGATGACTATGCTGCACCAATGAGAAGGAAATCAAGGACGAAAATCCAGGAAGCATGA 333 0.4505 MEDSYGGSSSKDKNCSIKEQDRLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALSTLGFDDYAAPMRRKSRTKIQEA* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2548 110 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu9g2548 110 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Pvu9g2548 110 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Pvu9g2548 110 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Pvu9g2548 110 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Pvu9g2548 110 SUPERFAMILY Histone-fold 20 101 IPR009072 GO:0046982
Pvu9g2548 110 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 102 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu9g2548 110 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 9 102 - -
Pvu9g2548 110 Gene3D Histone, subunit A 11 110 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2548 Pvu-Chr9 36004916 36006567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2548 17 101 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.176 2.62e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu9g2548 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2548 K08065 - gmx:102663543 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2548 9 36004916 36006567 Pvu9g2548 9 36004916 36006567 ECH
Pvu3g1076 3 25477244 25478133 Pvu9g2548 9 36004916 36006567 PCT