Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2498 ATGGTCTTCTCAACTGCTTTCCTCCATGAAGGTGGCCCCTTTTTTTCTAGAAAAAGGCCAAGAGCATTAGATCATGGACATCGAGATATAGATTTACATGCAGATGCAGGAATTTCCAGTGATTTTTCCTTCTTTTCCTCGGATCAAAATATAGAAAGGTGCATTAGTGCTGGTGATGTTCCCTCTTCCAGTAACACTGACGATAAAGTTGATCCAGATTCGGGAATGGAGATGAGCTGTCCATCAAATGTTAATAGTGGCTATCTTCCTGTGTATTCCACCACAGCGAATATATCACACCCGGAACAGAGTTTCTGTGGCTATGTGCAACAGCCCGCTTTAGTGAGTGGATGGATGTATGTGAATGAAAATGGGCAAATGTGTGGTCCCTACATCAAGGAGCAGTTATATGAGGGCCTAACTACTGGTTTCTTGCCATCTGAGCTTCCCGTGTATCCAGTAATTAATGGCACAATAATGAACCCTGTACCACTGAATTACTTCAAGCAGTTCCCTGATCATGTTTCCACTGGGTTTGCATATCTGATTATTGGTATCTCAGGCACAAGGTTGCCTACAATGGCAGTATATGAACAAGATAAATCTTTTGAGCTTGCTGCTCCTCTGGCTGGTAACCCAGATTCACAGTCTGTGTCACATTCGCATGTCAATTACTGCAGTAAGGAATCCAATCACTTAAATCCACACTCAGAGGCATTCAACAGTTTAATATCTTGTCAGATGTTACGTGAAGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCACATTCTATCAATGAATTGATTTCTTGGCACAGTCGTGGATATCTTAAAGATTCAACAGTGATCTTTCATTCTGATAAGAAGTATGACACCTTTGTGCTAGTGTCTGTTGTCAATGCATTAAAAGGAGATACCACTGGAACCATTTGTAGATCAGGTTCTACAAGTAATGAGGTTGGCGATATGGTAGACTTGATTAGTGAAATATCTGAGAACATTTCTTCCCAATTGCACATGAGTATCATGAAAGCTGGTCGCAGAGTTGTGCTAGATGGAATTATTGGTGATATTATTGCTGAATATGTTACGGAAAAGAAATATAAGAGGCATAAGCTTGAATCAGCTGCCCATACTCCTGAAAACAAGATGGTCAGCAAAGGTTCTGCTATTCCCAGTGATTCTGCTACTTCCCATATTCTTGATGATCGGGCTTGTCATGAAAGTTCCAGACTACCCTCAGCCAGTTTTAAAGCAGTTGGAAGCGTTGAGAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTACTTCTTGATTATTGCATGCAAGTCATGTGGAATGCAGTGTTTTTTGATACAATAGCAGATTACTTATCTTCTTGGAGGAAGAGGACTATTTGGTCTCATCCTGAGCCTCAACCATCTACTAATGGATGTAAATATCATGCTGAAAAGATTGAATCAGAAGCTTTGGCTCCCAAGCCAGATTTCTCTGAAAGCAATGCCGATGGCTATAATCAGTTTGGAGTATTAACAACAAAAAGAAACCATCCTCAGTTATTTTTATCTCCTAGTAGGTTCGAAGGTGGAAACTTACTAAAAGGTCAGAATGTTTCTTCTCCTTACCATGACTATAAAGATTTGACATTCATTCTTGAAAGCGTGGAGAATGAGCTTCACTTGTCTTCAAAGGCATCTTTTGCTGATTACATACGACATTTTGTTGAGAAGGAAGTGAACAAAATAGTTCCTTTCCCAGAAGAAATCATATCAAATGAGGTTGCTGTTAGTGACACTTGTTTTTCAGATAAACTGGCTGACGAAACGTTTGTTAAGGGAACTCTAAATGACAAGTCTTTGGATTCTGTTGAAGCAGGAAATTCATTTGGCAAGTCTGCATCTGGAAGCCTTATGTCTGGTATATTTTCAAAAGCATTTAAGGAGTTGTGTGGATATGTAGATGATGTGGTTGAAGAGGAGACTGATAACCTACCACCTGGAATTGAAGAGAAGTCTCAACCAGTTGTCATACACCACAATTCGAAATTTCGACCTTCAAGGTTGGTTGAATGTCATCCTAAGATTACAGAATATGTTGCAACTGCACTGTGCCGACAGAAACTGCATGATGAAGTTCTGGAAGAGTGGAAGTCGCTGTTTCTTGATTCTGTGCTCAATCATGTTTTTATATCATCAAGTACCATAAAGAAACATTTTATGTCTGATGGTCAGGAGAAAGGAGAAACGTTGAATTCAAGCAAGGAGAATTTGAATGGTGTTACTTCTGGACTGGGAATAGTGAAGGAAGGAGCAAAGAGTTCTTCGGATGTTCGTCTGGTGATTGGAAAGAATACTTATTGTCGCAAGAAGCTATCACGGAAGGAGTTAGTTTCCTCACAGACTGTAACAGAAAATAATTCTAGGCCAGCGAAGAAGCCCGTGGCCAAGTTAAGGAAACTTGTTTGTGGAGATGTTGGTGAGGCTGTTGAGGTTGAAATAGCTTCTGTTAAACATGAAAAGACAAGGAGGATTAAAGGGAAGAAGGATTCATCTTCTAAGGGCAGGTCTTCTGTCATTGTCAATGGTAGCTCACACAGTGATAAATTATCTTTAAAGAATAAAGCTGGTCAGAAAGTGTTGAAGGTTTCAGAGAATGTTAAGGATGTTGTGAAATCCACTGTAAAAAAGCTTTCAGTGTCTACTGATTATAGTGTTGGTGAGAAGAAGGTTGTCAAAAGTGATGGCTCTGTTAAAGAGAAAACTACAGCAACGAATAAAGCATCAAAATCAAAAAGGAAACGTCAAATGGATGGTACAGCACCTTCACATCCCCCAAAGATTTTGAAAATTTCAAATGGTGGTGCTTATCTGGGAACCAGTAAACAAAATACAGTGGAAAGTACGAAGTCTGCTAAATCCAAAGAATTGAATTTGTGTCCTAGATCTGTTGGATGTGCTAGGACTTCTATTGATGGTTGGGAGTGGCATAAATGGTCTAGAAGTGCCAGTCCTGCATATAGAGCACGTGTCAGGGGCCTTCCGTCTGTCCAGAACAAGTGCATATATTCTGAAAATAATTTATCTCAGTTGCCAAATTGTAAGGGTCTTTCTGCAAGAACAAATAGAGTGAAATTGCGTAACCTTCTTGCTGCTGCAGAGGGTGCGGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCGGTTACGTTTTCAAAGGAGCAAGATTCATGACTGGGGACTTGTTGCCTTGGAGCCAATTGAGGCAGAGGACTTTGTGATTGAGTATATTGGAGAACTAATTCGTCCTCGGATATCAGATATACGGGAACGGGAATATGAGAAAATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCCACAAAGAGAGGTGGGATTGCTAGATTTATTAACCACTCGTGTCAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGACATATAAAGGCTGGTGAAGAAATAACATACAATTATAAGTTCCCCTTGGAGGAGAAAAAGATTCCATGCAACTGTAGTTCCAGAAAGTGTCGTGGATCATTGAATTAG 3639 0.4012 MVFSTAFLHEGGPFFSRKRPRALDHGHRDIDLHADAGISSDFSFFSSDQNIERCISAGDVPSSSNTDDKVDPDSGMEMSCPSNVNSGYLPVYSTTANISHPEQSFCGYVQQPALVSGWMYVNENGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLIIGISGTRLPTMAVYEQDKSFELAAPLAGNPDSQSVSHSHVNYCSKESNHLNPHSEAFNSLISCQMLREECCWLYEDEKGMKHGPHSINELISWHSRGYLKDSTVIFHSDKKYDTFVLVSVVNALKGDTTGTICRSGSTSNEVGDMVDLISEISENISSQLHMSIMKAGRRVVLDGIIGDIIAEYVTEKKYKRHKLESAAHTPENKMVSKGSAIPSDSATSHILDDRACHESSRLPSASFKAVGSVENFWWSYAVVRKVLLDYCMQVMWNAVFFDTIADYLSSWRKRTIWSHPEPQPSTNGCKYHAEKIESEALAPKPDFSESNADGYNQFGVLTTKRNHPQLFLSPSRFEGGNLLKGQNVSSPYHDYKDLTFILESVENELHLSSKASFADYIRHFVEKEVNKIVPFPEEIISNEVAVSDTCFSDKLADETFVKGTLNDKSLDSVEAGNSFGKSASGSLMSGIFSKAFKELCGYVDDVVEEETDNLPPGIEEKSQPVVIHHNSKFRPSRLVECHPKITEYVATALCRQKLHDEVLEEWKSLFLDSVLNHVFISSSTIKKHFMSDGQEKGETLNSSKENLNGVTSGLGIVKEGAKSSSDVRLVIGKNTYCRKKLSRKELVSSQTVTENNSRPAKKPVAKLRKLVCGDVGEAVEVEIASVKHEKTRRIKGKKDSSSKGRSSVIVNGSSHSDKLSLKNKAGQKVLKVSENVKDVVKSTVKKLSVSTDYSVGEKKVVKSDGSVKEKTTATNKASKSKRKRQMDGTAPSHPPKILKISNGGAYLGTSKQNTVESTKSAKSKELNLCPRSVGCARTSIDGWEWHKWSRSASPAYRARVRGLPSVQNKCIYSENNLSQLPNCKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIREREYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCQPNCYTKVISVEGQKKIFIYAKRHIKAGEEITYNYKFPLEEKKIPCNCSSRKCRGSLN* 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2498 1212 MobiDBLite consensus disorder prediction 56 77 - -
Pvu9g2498 1212 ProSiteProfiles GYF domain profile. 252 308 IPR003169 GO:0005515
Pvu9g2498 1212 MobiDBLite consensus disorder prediction 858 875 - -
Pvu9g2498 1212 CDD SET_SETD1 1061 1208 - -
Pvu9g2498 1212 SMART set_7 1073 1196 IPR001214 GO:0005515
Pvu9g2498 1212 MobiDBLite consensus disorder prediction 915 974 - -
Pvu9g2498 1212 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 38 1212 IPR044570 GO:0042800|GO:0051568
Pvu9g2498 1212 Pfam SET domain 1085 1189 IPR001214 GO:0005515
Pvu9g2498 1212 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 38 1212 - -
Pvu9g2498 1212 SUPERFAMILY SET domain 1068 1209 IPR046341 -
Pvu9g2498 1212 MobiDBLite consensus disorder prediction 929 944 - -
Pvu9g2498 1212 Gene3D - 107 178 IPR035445 -
Pvu9g2498 1212 Gene3D - 244 334 IPR035445 -
Pvu9g2498 1212 MobiDBLite consensus disorder prediction 960 974 - -
Pvu9g2498 1212 ProSiteProfiles Post-SET domain profile. 1196 1212 IPR003616 -
Pvu9g2498 1212 ProSiteProfiles SET domain profile. 1073 1190 IPR001214 GO:0005515
Pvu9g2498 1212 MobiDBLite consensus disorder prediction 846 880 - -
Pvu9g2498 1212 SUPERFAMILY GYF domain 248 301 IPR035445 -
Pvu9g2498 1212 Gene3D SET domain 913 1212 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2498 Pvu-Chr9 35509650 35527578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2498 1072 1212 C2H2 Transcription Factor Family AT2G23740 36.196 3.34e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu9g2498 SET 8.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2498 - - pvu:PHAVU_009G241600g 2406.33