Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2476 ATGGAAAGAGAAAAGCCAATGAGGTTTACTGGGGAGCTGCTTAGGATTGCAACAGATAATTACTCTGTATCGTTGGGGTCAGGAGGTTTTGGAGAAGTTTACAAAGGAAGTTTAAGTGATGGAACAACTGTGGCTGTGAAGGTTCTACGAGCAAATTCTTACAAGAGAATTGAGGAACAGTTCATGGCAGAAGTGGGTACAATTGGAAAAGTTCATCATTTCAACCTAGTAAAGTTGTATGGATTTTGCTTTGAAAAAGAGCTGAGAGCACTGGTTTATGAGTACATGAAGAATGGATCTCTTGACAAGTATCTGTTTCATGAAAACAAGACCCTTGGATATGAAAAGCTTCATGAGATTGCAGTTGGAACAGCCAGAGGAATTTCATACTTGCATGAAGATTGTGAACAAAGAATAGTCCACTGTGACATCAAACCAGGAAATATTCTCTTGGACAACAACTTCAATCCTAAAGTTGCTGATTTTGGATTAGCTAAACTCTGCAACAGGGACCATTCTCATATAACCATGACAGGAGGTAGGGGGACTCCTGGTTATGCTGCACCTGAGCTTTGGATGCCATTTCCTGTGACTCACAAGTGTGATGTTTACAGCTTTGGAATGCTGTTATTTGAAATCATAGGAAGGAGAAGAAACCTTGACATTAACCTTCCCCAAAGTGAAGAGTGGTTTCCAGTATGGGCTTGGAAAAGATTTGATGGTGGAGAATTGGAAGTGTTGATAAATGCTTGTAAGATTGAGGAGAGGTATATGAAAATGGCTGAAAGAATGGTGAAGGTAGCTTTGTCTTGTGTTCAATATAGGCCAGAATCAAGGCCAATTATGAGTGATGTGGTGAAAATGTTGGAAGGTTCAGTAGAAATTTCTAAACCCTCTAACCCATTTCAGCATATCATAGGTGGAACTTTCCAGACTCATTCTGTCCATGCATCCCAAACTGATGTTAATACAAGTATCAATTCCAGCTCTTCTTTTAAGTTTATTTATTTTTTTATGGATAAAAAAAACCAACCAGGCATTGTTTATGACATTCATCATCAGGGGAATGAGGACATTGAATTGGCATTTAACAGAATGGAACTTCTGCATTTCTTCAGTAACTGA 1125 0.3884 MEREKPMRFTGELLRIATDNYSVSLGSGGFGEVYKGSLSDGTTVAVKVLRANSYKRIEEQFMAEVGTIGKVHHFNLVKLYGFCFEKELRALVYEYMKNGSLDKYLFHENKTLGYEKLHEIAVGTARGISYLHEDCEQRIVHCDIKPGNILLDNNFNPKVADFGLAKLCNRDHSHITMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNLDINLPQSEEWFPVWAWKRFDGGELEVLINACKIEERYMKMAERMVKVALSCVQYRPESRPIMSDVVKMLEGSVEISKPSNPFQHIIGGTFQTHSVHASQTDVNTSINSSSSFKFIYFFMDKKNQPGIVYDIHHQGNEDIELAFNRMELLHFFSN* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2476 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Pvu9g2476 374 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Pvu9g2476 374 Pfam Protein tyrosine and serine/threonine kinase 24 289 IPR001245 GO:0004672|GO:0006468
Pvu9g2476 374 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Pvu9g2476 374 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 313 IPR045874 GO:0004672
Pvu9g2476 374 SMART serkin_6 19 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g2476 374 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Pvu9g2476 374 Gene3D Transferase(Phosphotransferase) domain 1 96 303 - -
Pvu9g2476 374 ProSiteProfiles Protein kinase domain profile. 19 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g2476 374 CDD STKc_IRAK 25 291 - -
Pvu9g2476 374 PANTHER PUTATIVE-RELATED 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2476 Pvu-Chr9 35255572 35256831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2476 8 302 Receptor kinase-like Gene Family AT5G38280 43.894 1.51e-76 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Pvu9g2476 PK_Tyr_Ser-Thr 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2476 - - gmx:100776445 588.186