Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2474 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGCGACGACGACGCCGTTTCCTATCTCCTCAACGACGACGATGACGACGTCGTCGGCCCCCTCCCCTTTCCCGTCCTCCAAACCGCTCCCTGCGGCTTCGTCGTCACCGACGCGCTTGAGCCCGACCACCCTATCATATACGTCAACGCCGTCTTCGAGATGGTCACCGGCTACCGCGCAGAAGAAGTGCTCGGTCGCAACTGCCGATTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCGATTGTTGTTTCAGAGATTAGAAGATGCCTTGATGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAAATTGCGTCTGACGCCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAAGCAAACATTGATCTTGGTCCCCTTCCGGGTTCTACGCTTAAGGAATCTACCAAATCATCAGATCGATTTCATTCTGTGCTTTCCTCATTAAGTCCTCTTCCAGTAGGGGACCGTAATGTTACTCGTGGACTTTGTGGGATATTGCAAATAAGTGACGAGGTATTGTCTCTCAAGATACTTGCTCTCTTAACTCCAAGAGATATTGCATCAGTTGGCTCTGTTTGTAGGCGATTGTATGAGCTAACAAAAAATGAAGATCTTTGGAGAATGGTGTGTCAAAATGCATGGGGCAGTGGGACTACACGTGTTTTAGAGACCGTGCCCGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCATGGAGAAAAATGACTGTTGGAGGTGCTGTTGAACCTTCAAGATGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTACTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACATGGCGTGAAATCTCTGGACTGGCACCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACACTTGATGGTACTAAGCTTATAGTTTCTGGTGGCTGCGCTGATTCTGGTGTACTCTTGAGTGATACTTTCCTCCTTGATCTCTCGATGGAGAAACCTGTCTGGAGAGAGATACCAGTAGCCTGGACTCCACCTTCACGTTTGGGTCACACACTGTCCGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCTTGCGTTTTCGCTCTAGTGATGTATTCACTATGGATTTAAGTGAAGAGGAGCCATGTTGGAGGTGTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCAGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGACCCGACTGATGAGAAGCCTACATGGAGAATCCTGAATGTACCCGGACGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCTAGTTCTGTCATCTAA 1839 0.4867 MEWDSNSDLSGDDDAVSYLLNDDDDDVVGPLPFPVLQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSIVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNKLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSTLKESTKSSDRFHSVLSSLSPLPVGDRNVTRGLCGILQISDEVLSLKILALLTPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGSGTTRVLETVPGARRLGWGRLARELTTLEAAAWRKMTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2474 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Pvu9g2474 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 149 IPR035965 -
Pvu9g2474 612 SUPERFAMILY Galactose oxidase, central domain 283 597 IPR011043 -
Pvu9g2474 612 CDD PAS 39 141 IPR000014 -
Pvu9g2474 612 Gene3D - 273 476 IPR015915 GO:0005515
Pvu9g2474 612 Gene3D - 478 610 IPR015915 GO:0005515
Pvu9g2474 612 Pfam Galactose oxidase, central domain 358 407 - -
Pvu9g2474 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 611 - -
Pvu9g2474 612 PANTHER ADAGIO PROTEIN 1-LIKE 1 611 - -
Pvu9g2474 612 TIGRFAM sensory_box: PAS domain S-box protein 52 148 IPR000014 -
Pvu9g2474 612 ProSiteProfiles PAS repeat profile. 35 110 IPR000014 -
Pvu9g2474 612 Gene3D PAS domain 33 160 - -
Pvu9g2474 612 Pfam Galactose oxidase, central domain 296 346 - -
Pvu9g2474 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Pvu9g2474 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Pvu9g2474 612 Gene3D - 198 244 - -
Pvu9g2474 612 SUPERFAMILY F-box domain 194 261 IPR036047 GO:0005515
Pvu9g2474 612 Pfam PAS domain 40 149 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2474 Pvu-Chr9 35239375 35246676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2474 35 150 AGC Kinase Gene Family AT5G58140 34.188 5.74e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2474 K12115 - gmx:100802828 1178.31