Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2473 ATGGGTGTGTGGGAAGTCGAGATGAGCGTGATCCAGTTTCTTTTTCTGGAAGTTCCTCAACTCGCTTCTCACCACTCCTTTTATGCCTTTCTCATTCTCATAATCCCATTCCATTTTTCAACTCTCTCAACACCACCGACTCTTCCGCCGCCACCTTCTCTCCGATCACCGCCGCTCTCGTTTCCACGCGCCTCCCTCCATGCTCTGACCTTCAACCGCCGCCGCGATTCTGTTATTTTTTTTTTAATGGAGTGGGACAGCGATTCCGATCTCAGCGCCGACGACGACGCCGCCTCCTTTCTCCTCAACCACGACGATGACGAGGTCGCCGGTCCCATCCCCTTCCCCGTCCTCCAGACCGCCCCCTGCGGCTTCGTCGTCACCGACGTGCTTGACCCGGACCACCCAATCATATACGTCAACGCCGTTTTCGAGATGATCACCGGTTACCGCGCGGAAGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCCACTGTTGTTTCAAACATTAGAAGATCCCTTGATGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACCGATTGCATCTAACACCTATTTATGGAGATGATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGACAAACATTGATCTTGGTCCCCTTCCGGGTTCTAAGATTAAGGAATATACTAAACCATCAGATCAGTTTCTTTCAGTGCTTTCCTCATTGAGTCCTCTTCATGTTGGCGACCGTAATGTTAATCGTGGAGTTTGTGGAATTTTGCAATTAAGTGACGAAGTATTGTCTCTCAAGATACTTTCTCGCTTGACTCCAAGAGATATTGCATCTGTTGGTTCTGTTTGTAGGCAGTTGTATGAGATAACAAAAAATGAAAGCCTTTGGAGAATGGTTTGCCAAAATGCTTGGGGCAGTGAGACTACACGTGTTTTGGAGACTGTGCCTGGTGCTAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTCGAACCTTCACGATGTAATTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGGGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTACTGGATCTCAATTCTAGTAATCCCGAGTGGCAACATGTCCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCTGTGGAACGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATCTCTGGATTGGCACCTCCACTTCCGAGATCTTGGCATAGCTCCTGTACACTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGTGTACTCTTGAGTGATACTTTCCTCCTTGATCTCTCGATGGAGAAACCTATCTGGAGAGAGATACCAGTAACATGGACTCCACCTTCGCGTCTGGGTCACACACTATCAGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTGCGTTTTCGCTCCAGTGATGTATTCATGATGGATTTAAGTGAGGACGAGCCATGTTGGAGGTGTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCAGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTGAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCCGGCCTTCATTCTGCTTCCCAGCTTTACATACTAGATCCGACTGATGAGAAGCCTACATGGAGAGTCCTAAATGTACCTGGGTGCCCTCCTAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTAGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGATCTCCATGAACTGTCCTTGGCATGTTCTGTTATCTAA 2085 0.4854 MGVWEVEMSVIQFLFLEVPQLASHHSFYAFLILIIPFHFSTLSTPPTLPPPPSLRSPPLSFPRASLHALTFNRRRDSVIFFLMEWDSDSDLSADDDAASFLLNHDDDEVAGPIPFPVLQTAPCGFVVTDVLDPDHPIIYVNAVFEMITGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSNIRRSLDEGVEFQGELLNFRKDGSPLMNRLHLTPIYGDDEITHVIGIQFFTETNIDLGPLPGSKIKEYTKPSDQFLSVLSSLSPLHVGDRNVNRGVCGILQLSDEVLSLKILSRLTPRDIASVGSVCRQLYEITKNESLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGTQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFMMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRVLNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSDLHELSLACSVI* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2473 694 Gene3D - 278 326 - -
Pvu9g2473 694 Gene3D - 559 692 IPR015915 GO:0005515
Pvu9g2473 694 SUPERFAMILY PYP-like sensor domain (PAS domain) 122 231 IPR035965 -
Pvu9g2473 694 ProSiteProfiles PAS repeat profile. 130 192 IPR000014 -
Pvu9g2473 694 Gene3D - 356 558 IPR015915 GO:0005515
Pvu9g2473 694 Gene3D PAS domain 115 242 - -
Pvu9g2473 694 Pfam Galactose oxidase, central domain 442 489 - -
Pvu9g2473 694 Pfam F-box-like 290 328 IPR001810 GO:0005515
Pvu9g2473 694 Pfam PAS domain 122 231 IPR000014 -
Pvu9g2473 694 Pfam Kelch motif 535 586 IPR011498 GO:0005515
Pvu9g2473 694 Pfam Kelch motif 602 649 IPR011498 GO:0005515
Pvu9g2473 694 TIGRFAM sensory_box: PAS domain S-box protein 130 230 IPR000014 -
Pvu9g2473 694 Pfam Galactose oxidase, central domain 378 428 - -
Pvu9g2473 694 PANTHER ADAGIO PROTEIN 1-LIKE 83 693 - -
Pvu9g2473 694 SUPERFAMILY F-box domain 274 343 IPR036047 GO:0005515
Pvu9g2473 694 SUPERFAMILY Galactose oxidase, central domain 364 679 IPR011043 -
Pvu9g2473 694 CDD PAS 130 223 IPR000014 -
Pvu9g2473 694 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 83 693 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2473 Pvu-Chr9 35232949 35237760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2473 117 232 AGC Kinase Gene Family AT5G58140 35.043 1.14e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2473 K12115 - gmx:100802828 1140.95