Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2442 ATGCGGGATGCGGAGAATTTAAATAAGAAAGGATCTATAAAATCCTGTTACTCAAAGGAACAGATTAAGTCCAAGCTATTATCATCAAAATTAAAAACAAGTAGCACAAAACACCGAAAAAAGGAACACAAAGAGAAGTCAAGATCTCATAAATACAGAGTTGGTACGAACAGATCAAAGAAAAGAGTTGTTGATTCTTCTATCAAGGCACCACTTGAGGACTCTTCAAATAAAAGAGTGATTATTCGAAAAACTCTCCATAAAACTGATGGGAACTCTTCACGGATGGTGTCTTCAACAAGGCTACAAGGAAGAAAAAATCCTCATAGTTCTAGAAAAGAGGGCAATGGTGTTGATGAGGAGGCAAAAATTAAAAAACGTAAGAGCAGCAAAAAGAAGAATAGTCAAAGGGACAACATGGATCATGACGATGCTTCACGCCTTAAAAGGAGAACAAGATACCTCTTAATCAAAATGAAGTTGGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAGGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAAAAGCAGATTTTAAATTGTAAACTTAGTATTCGTGATGTTATACGCCAACTGGATTCTCTTAGCTCTGTGGGTAGTATTGAAGATTCTGTCATTGCTCCAGACGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCTTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATAATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGACAGTAGTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGTGATATTGCATTACTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAACCCAGAGAGGAAAGAAGACAGCCACAGCATCAATACAGAAGGTGCTGATGAAAATTCATCCAATGATTCAACCAGTTCTTCGAGTTTGTGGCCTTTGAATGGAGAATGTCCTCCAGTAGATGAAGACCTTAGTCATGAATATTATTCTGTGAATAGTTTCATTGATTCTGATGAATCTGGGGAAATAGCATGTGGCCGTAGGCAGCGTAAAGCCGTTGACTACAAGAAACTGTACGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAGCAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACTCTGCATGAAAGTGAAAATAAATATCACAATAATGAGAGCAATGATAGAATAAGAGAGGGTTCTTCAGGCTTACAAATAAGAAGATCTTGTTTCAGAATTCCACTTGATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAACGAGCTTCCTCCTAGATCCGTGAAGGAAGGTCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACCTGGCACTTAAAACCAGAAAGTATGAATCAGAAGAACAGCTTCAGAGTTCCACATCTCAGATATCAAAGGATTCTACATCTCCAAACATGCAGAAAGACGAACTTCTGGAACCAGAAGTCCCCAAAATTACTCTGATGCATTCCCAGAAGGATGGTCAAAACATCACAGGGCAAGAGAAAAATAAATTATCTAACAGTCTTTTGAAGAAAAGGAAGAAAAAACCATCTCCACCTCTATCAAGAGAAAATAGCAACAAGGACTCTATGGAGATGAGTGATGATGTTAATTTGAAGAAACTTTTGAAAGAAAGGAAAAGAAGGGTAAATTTTACATATGAAGGAGACTCTGAGGTAGCAGAGTTGGAATTTGAAAGACTGAGCAAAGTGAAGAGTAAAGTAGATAGCATGAAGCAAAAACTAAGTGAAGTTCAATATTGCAGAGCTAAGGGATCAAATGAACCCTCCATTATATATGTTCCCACAGCCCAATTAAGGGAAAAGGTTGACTAA 2139 0.3862 MRDAENLNKKGSIKSCYSKEQIKSKLLSSKLKTSSTKHRKKEHKEKSRSHKYRVGTNRSKKRVVDSSIKAPLEDSSNKRVIIRKTLHKTDGNSSRMVSSTRLQGRKNPHSSRKEGNGVDEEAKIKKRKSSKKKNSQRDNMDHDDASRLKRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILNCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEIIESTNAHLGTQFSLDSSWQDVFKEEAAMPDGDIALLNPEEEWPSDDPEDDDYNPERKEDSHSINTEGADENSSNDSTSSSSLWPLNGECPPVDEDLSHEYYSVNSFIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHESENKYHNNESNDRIREGSSGLQIRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRKYESEEQLQSSTSQISKDSTSPNMQKDELLEPEVPKITLMHSQKDGQNITGQEKNKLSNSLLKKRKKKPSPPLSRENSNKDSMEMSDDVNLKKLLKERKRRVNFTYEGDSEVAELEFERLSKVKSKVDSMKQKLSEVQYCRAKGSNEPSIIYVPTAQLREKVD* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2442 712 ProSiteProfiles 'Homeobox' domain profile. 488 548 IPR001356 GO:0003677
Pvu9g2442 712 PANTHER POLYCOMB PROTEIN PCL 6 692 - -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 359 378 - -
Pvu9g2442 712 Pfam PHD-finger 235 290 IPR019787 -
Pvu9g2442 712 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 555 575 - -
Pvu9g2442 712 Gene3D - 490 558 - -
Pvu9g2442 712 SUPERFAMILY Homeodomain-like 491 556 IPR009057 -
Pvu9g2442 712 CDD PHD_PRHA_like 235 287 IPR045876 -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 329 382 - -
Pvu9g2442 712 CDD homeodomain 496 543 IPR001356 GO:0003677
Pvu9g2442 712 MobiDBLite consensus disorder prediction 429 459 - -
Pvu9g2442 712 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 549 637 - -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 76 90 - -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 107 126 - -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 465 484 - -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 91 105 - -
Pvu9g2442 712 SMART HOX_1 490 552 IPR001356 GO:0003677
Pvu9g2442 712 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 6 692 - -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 332 346 - -
Pvu9g2442 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Pvu9g2442 712 SMART PHD_3 235 288 IPR001965 -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 25 146 - -
Pvu9g2442 712 MobiDBLite consensus disorder prediction 590 606 - -
Pvu9g2442 712 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Pvu9g2442 712 Pfam Homeodomain 501 543 IPR001356 GO:0003677
Pvu9g2442 712 MobiDBLite consensus disorder prediction 32 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2442 Pvu-Chr9 34803202 34809364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2442 136 568 Homeobox Transcription Factor Family AT4G29940 57.919 1.17e-158 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pvu9g2442 Homeodomain 7.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2442 - - gmx:100816912 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2442 9 34803202 34809364 Pvu9g2442 9 34803202 34809364 ECH
Pvu3g1467 3 33522655 33528111 Pvu9g2442 9 34803202 34809364 PCT