Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2438 ATGGCGACGGAGCAGACCAAATTCAGCGTCTTGTGCAGCCTCTTCACGTGGACGCAGCGGACTAAGTCGGCGCCGAGAAAACGCTTCAAATTCCGCAAGTTTCTCGACGCCTTCTGCATTGATCGCAACTTCTTCCCTGCCATTCGCCTCATTCTTCCCAACCTCGATCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCCGTCCTCGCCACCTCCCTCATCGACGCCCTCGGCATCTCCCGCGACTCCCCCGATGCCCTACGACTCGTCAATTGGCGCAAGGGCGGCGCCGCCACCGGCGCAACAGCTGGAAATTTTGCCCTCGTCGCCGCCGAGGTGCTGCACCTCCGGCAAGGGACCGCTTCGGGAGGGTTGACGATAAGGGAGTTGAATGAGTTGCTTGACCGGTTGGCGTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCACGAGTTCCATCCTGATGCAGAAGACTTGTTTAATGTTACTTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGGAATCAACGGCATAAGCGACAGGATATTGAAGTTGGAAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTAGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGCGACCGAATTCAAATTCATAAAAATGGACCCGAGATACACTTTTTCTCAAGGAACTTCATTGATCATTCTGAATATGCACATGCAATGTCAGAAATCATAATACAAAATGTTCTTGTAGATAGGTGTATTCTTGATGGTGAAATGTTGGTGTGGGACACATCCTCGAAACGCTTTGCCGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGAGATGGACTTGATAGTGACAGACAGTTATGCTATGTTGCGTTTGATATCCTTTATTTTGGAGATACCAGTGTGATTCACCAAACTTTGAAGGAACGACATGAGATTTTATGTAAAGTTGTTAGGCCAATGAAGGGACGATTGGAAATTTTGGTACCTAATGCTGGTATCAACAGTCATCTTACTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAATATTGATGAAGTTGAGCGGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAAGACCGCAGCTCCAAATGGGAGCCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACATGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCCATCTCCAAATGAACAACCTAAGCGGTTTATATCCTTTTGCAGAGTTGGCACTGGACTCTCTGCTGAGGAGCTTGATGTTGTAGTGACCAAACTGAAACCGTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAATGAATGTCTTGATGTTCAATCGTTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAAGGATACAGAATATGGCAGTAAACAGGACAGTAAACCAAAAAGAACGAAATCCTCCACTGGGGGAGAGAAGAAAAACATGTCAATTGTTCCTTCTCATTTAATTCAAACTGATATTTCCAGCATTAAGGGGGGCTCCTTAATATTTTCAAATATGATGTTCTACTTCGCTAATGTACCTCCATCACATTCTCTTGAGTCCTTACACAAAATAATTGCTGAGAACGGGGGAACTTTTTCAATGAATTTGAACAACTCAGTCACCCATTGTGTTGCCGCCGACAGCAAGGGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTACTAGATTGTTATGAACAAAAGAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTTTCTGAACTGACAAAGAAGAAGTTACGAGAAGAAATTGATGAGTTCTCAGACTCTTTCTACTTGGACCTTGATCTTGGAGACATCAAGCAGCTCTTAAGCAATATTCATAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAATACCTTCACTGAAAGGAGATTGGCATTTTATATTACAACTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACCTGTGCAACCCATTTAGTGGCCTTTCTTGTGCCAGGATGTCGGACTGACTCTGAACAAATACTGAATAGTTTTACTTCAGCAGAAAGAAAAATTCTCCAAAGCAAGAGGTTGCATGTAGTTAAATCCCAATGGTTGGAAGATTGTTCAGACAGTAGCAAAAGATTACCAGAAGACTCTTACAGTTTGAAACCTTGGGGAATAGAAGAGTCAACTGCTGAAGATTGTGAACAGGACTTGGCGTTAGAGGCTCTTCTGAGTGGAGATAATATAGAAGACCAAAACACATCTTTCTCTGACAAGGGAAATCGGCAAAGAAGTGAAAAAGTTGCATGCGAAGGCAATTCGGCCTTGTTATCCCAAGAGAAGGGTATCAAAAGGAAAAGAGGAAGACCTGCGGGCAGTGGTATAAAAATTGTAAAACCAGCTGGCAAACAAACTCGAAGAGCACGACCACAAAATGTGAAAAAGCCTGCTAAAATATGTGAATATGAATCATCGGATGAAAGTGATTCTCGTGACAAGAGACCAATTGAGAAGGAGATTGACACTAGAGCAGGAAGTCTTAACCTTTGCAAGAAACACTCAGAACGCCAGGAGAATGAGGAACGGGATAATGTCCATGTTTCTGGGACAGTGGAAAGTTCTGAACAAAATAAGGTAGAGAAGCTAGAGGACTTGAAGGAGAATGAACATGAAAGAATGTTGATTCCTGAAATAGAAATGATTGATGGGCACAACAATGACCAAAACAATGTGGTGATTGAGAAATTAGAATTTTCTGCTGACCCCCTGCAGGCAATGCTATTTGACATGATTCCTAGTCTTGGCCCCAAAAAGGCTGAGCAACCTATGAATCTTAGTGTTAGAGAAGAGAAGGTACCAGAAGCCTCCAATGCAGCAACAGAGCCAACAACTACAAAGAAAAATAAGGTTAGCTTCATGGATGCTGCCAATGACCTGCTGAAGGACTGGTAA 3519 0.4263 MATEQTKFSVLCSLFTWTQRTKSAPRKRFKFRKFLDAFCIDRNFFPAIRLILPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLVNWRKGGAATGATAGNFALVAAEVLHLRQGTASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGPEIHFFSRNFIDHSEYAHAMSEIIIQNVLVDRCILDGEMLVWDTSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILCKVVRPMKGRLEILVPNAGINSHLTSGEPCWSFIAHNIDEVERFFKETIENRDEGIVLKDRSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRHGGQVAQFLVGLAERPSPNEQPKRFISFCRVGTGLSAEELDVVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQKDTEYGSKQDSKPKRTKSSTGGEKKNMSIVPSHLIQTDISSIKGGSLIFSNMMFYFANVPPSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKLREEIDEFSDSFYLDLDLGDIKQLLSNIHKSEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTAIPSLKGDWHFILQLALRRFKLEVLMGGGKVTSNLTCATHLVAFLVPGCRTDSEQILNSFTSAERKILQSKRLHVVKSQWLEDCSDSSKRLPEDSYSLKPWGIEESTAEDCEQDLALEALLSGDNIEDQNTSFSDKGNRQRSEKVACEGNSALLSQEKGIKRKRGRPAGSGIKIVKPAGKQTRRARPQNVKKPAKICEYESSDESDSRDKRPIEKEIDTRAGSLNLCKKHSERQENEERDNVHVSGTVESSEQNKVEKLEDLKENEHERMLIPEIEMIDGHNNDQNNVVIEKLEFSADPLQAMLFDMIPSLGPKKAEQPMNLSVREEKVPEASNAATEPTTTKKNKVSFMDAANDLLKDW* 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2438 1172 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pvu9g2438 1172 MobiDBLite consensus disorder prediction 1003 1057 - -
Pvu9g2438 1172 Gene3D BRCT domain 666 781 IPR036420 -
Pvu9g2438 1172 PANTHER DNA LIGASE 4 3 911 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Pvu9g2438 1172 ProSiteProfiles BRCT domain profile. 840 910 IPR001357 -
Pvu9g2438 1172 MobiDBLite consensus disorder prediction 613 629 - -
Pvu9g2438 1172 CDD OBF_DNA_ligase_IV 449 593 - -
Pvu9g2438 1172 SUPERFAMILY BRCT domain 656 741 IPR036420 -
Pvu9g2438 1172 SUPERFAMILY BRCT domain 792 912 IPR036420 -
Pvu9g2438 1172 Gene3D - 445 606 IPR012340 -
Pvu9g2438 1172 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 43 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu9g2438 1172 Coils Coil 1060 1081 - -
Pvu9g2438 1172 MobiDBLite consensus disorder prediction 1135 1159 - -
Pvu9g2438 1172 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pvu9g2438 1172 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu9g2438 1172 CDD BRCT_DNA_ligase_IV_rpt1 656 742 - -
Pvu9g2438 1172 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Pvu9g2438 1172 ProSiteProfiles BRCT domain profile. 652 740 IPR001357 -
Pvu9g2438 1172 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Pvu9g2438 1172 Pfam ATP dependent DNA ligase C terminal region 467 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pvu9g2438 1172 Gene3D BRCT domain 798 910 IPR036420 -
Pvu9g2438 1172 MobiDBLite consensus disorder prediction 606 633 - -
Pvu9g2438 1172 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pvu9g2438 1172 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Pvu9g2438 1172 SMART BRCT_7 654 730 IPR001357 -
Pvu9g2438 1172 SMART BRCT_7 807 900 IPR001357 -
Pvu9g2438 1172 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Pvu9g2438 1172 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Pvu9g2438 1172 MobiDBLite consensus disorder prediction 972 1067 - -
Pvu9g2438 1172 Pfam BRCT domain, a BRCA1 C-terminus domain 654 737 IPR001357 -
Pvu9g2438 1172 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pvu9g2438 1172 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2438 215 602 Core DNA Replication Machinery Family AT1G08130 27.475 4.57e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2438 K10777 - gmx:100816002 2050.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2438 9 34758629 34774233 Pvu9g2438 9 34758629 34774233 ECH