Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2437 ATGGAGAATATTGAAGAGTACAAGCATTACTGGGAGACCACCATGTTCCTCCAGACCCAAGATCTTGACAGTTGGGGGTTCGATGAGGCTTTATCAGGGTACTACGATTCCAGCTCCCCTGATGGTGCTGCTTCATCTGCAGCTTCTAAGAACATTGTTTCCGAGAGGAATAGGAGGAAGAAGCTCAACGAAAGGCTTTTCGCGCTTAGATCGGTGGTTCCTAATATCAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCTATTGAATACATCCAGGAATTGCATGAGAAAGAGAAGATAATCCAAGCTGAGATAATGGATCTTGAATCTGGGATGCCAAAAAAGAGTAGTTCAAGCTATGATGATTTTGAGCAGGAACAGCTTCCTGCGGTGCTGAGGTCCAAGAAGAAGAGAACCGCGCAGATATACGATTCAGTCAGTTCAAGAAACACCCCAATTGAAGTCCTTGATCTGAGCGTTACCTACATGGGGGAGAAAACTGCTGTGGTGAGTTTGACATGTAGCAAAAGAACAGACACAATGGTGAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTGAAGATCATCACTGCCAACATCACTTCGTTTTCAGGGAAGCTTCAGAAAACAGTCTTCATCGAGGCGAATGAAGAAGAGAAATATCATTTGGAGATAAAGATACAGACAGCCATTGCAGCTCTTAACGAACCTCTAAGCCCCATGAGCATTTAA 735 0.4395 MENIEEYKHYWETTMFLQTQDLDSWGFDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQELHEKEKIIQAEIMDLESGMPKKSSSSYDDFEQEQLPAVLRSKKKRTAQIYDSVSSRNTPIEVLDLSVTYMGEKTAVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGKLQKTVFIEANEEEKYHLEIKIQTAIAALNEPLSPMSI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2437 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 111 IPR036638 GO:0046983
Pvu9g2437 244 Gene3D - 43 111 IPR036638 GO:0046983
Pvu9g2437 244 PANTHER TRANSCRIPTION FACTOR BHLH35 2 238 - -
Pvu9g2437 244 Pfam Helix-loop-helix DNA-binding domain 53 95 IPR011598 GO:0046983
Pvu9g2437 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 238 - -
Pvu9g2437 244 SMART finulus 52 101 IPR011598 GO:0046983
Pvu9g2437 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2437 Pvu-Chr9 34746948 34754176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2437 1 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.384 2.42e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g2437 HLH 9.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2437 - - gmx:100817978 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2437 9 34746948 34754176 Pvu9g2437 9 34746948 34754176 ECH
Pvu3g1460 3 33447005 33448263 Pvu9g2437 9 34746948 34754176 PCT