Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2413 ATGGAAGATGATGAGCCATGCATCACCACTCTAAGCCTTGGACTAGGAATGGGAGGTCATGTGCCTAAGAAGGACAAGCAGAAGCAGAAGCTCCCTTCCTTGGACCTGACGTTTGATATTTGTCCAAGGAGAGAGCAAATGATTCACGTGGATCATCAACAACAACTTCATGATGATAAGGCAAAAGGGTTGTTATGTTTGAAACACCCCAATGAAAATAACAGCCCTGAGAGCAGCAACAACAGCAACAACGGCACCAGAAAGAAACTGAAGCTTACAAAGGAGCAATCAGCCACCCTTGAGGATATTTTCAAGCTGCATACCACTCTTAACCCTGCACAGAAGCAGGCACTTGCTGAGAAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGCTGTGAGAAACTAACCGATGAGAATCTGAGACTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGGTTGGACCAAAACCATTGTACATTCAACTCTCCAAGGCCACAACTCTGAGCATTTGTTCATCGTGTGAGAAAGAGTTGAAGCCTAAAGAAGGGAAGAAAGGGGGCATTACCGATGTGGTCCGAAACAGCAGCCACAAATTGCAGAACAGTGTAGGTGTAAAGGGCATTTAG 702 0.4487 MEDDEPCITTLSLGLGMGGHVPKKDKQKQKLPSLDLTFDICPRREQMIHVDHQQQLHDDKAKGLLCLKHPNENNSPESSNNSNNGTRKKLKLTKEQSATLEDIFKLHTTLNPAQKQALAEKLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKVGPKPLYIQLSKATTLSICSSCEKELKPKEGKKGGITDVVRNSSHKLQNSVGVKGI* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2413 233 Gene3D - 65 142 - -
Pvu9g2413 233 SUPERFAMILY Homeodomain-like 72 144 IPR009057 -
Pvu9g2413 233 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Pvu9g2413 233 MobiDBLite consensus disorder prediction 66 88 - -
Pvu9g2413 233 Pfam Homeobox associated leucine zipper 143 176 IPR003106 GO:0006355|GO:0043565
Pvu9g2413 233 MobiDBLite consensus disorder prediction 71 87 - -
Pvu9g2413 233 SMART HOX_1 85 147 IPR001356 GO:0003677
Pvu9g2413 233 Coils Coil 142 176 - -
Pvu9g2413 233 SMART halz 143 186 IPR003106 GO:0006355|GO:0043565
Pvu9g2413 233 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Pvu9g2413 233 Pfam Homeodomain 87 141 IPR001356 GO:0003677
Pvu9g2413 233 PANTHER - 7 207 - -
Pvu9g2413 233 CDD homeodomain 87 144 IPR001356 GO:0003677
Pvu9g2413 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9-LIKE 7 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2413 Pvu-Chr9 34422406 34423755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2413 77 201 Homeobox Transcription Factor Family AT3G60390 64.000 5.90e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu9g2413 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2413 K09338 - gmx:100790522 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1432 3 33069106 33070578 Pvu9g2413 9 34422406 34423755 PCT