Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2405 ATGATACCAACTTATCGTTATTCAGTGTCTTCTCCTATGCTTATAGATCTTAATGAAGAAGATCATACACACAAGCAACCCTCTTCTTTATCTACTTCTATTCTCTTCAACCCAGATCAAGATCAAGGAGGATTTTGCTATTGGGAATCAAAACACTTTCAAAGTGACGAAGAGGCCCAGAAGATTGTTCCTTCCAGTGGATCATGGGATCATCCAGTAGAAAAGATTGAAAACAGAAGTGATCTGAAGCTGAGAGTTTGGAAGAAAGAAGAAGGCTGTGACAATCTTAAAGGTGAAGATAGTTCAACGATGTCTTCAAAAATGAGAATGGTGCGGAAAATGATAGTTTCAGATGAAACAGATTCTGATATAGCAGACATCTCCAGCTCTAAGCAGATCAAGTATAAAAAGAAAAACCCAGAACTGTCACCACTAGTCACTGATGATAGTAACTGTAATTCTTCTTCAAACCAGAACAGTGTCCCTCTTAGGGTTTGTGTTGATTGCCACACTACTAAGACCCCTCTCTGGAGGAGTGGACCAAAAGGTCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGAAAGGCGCGCCATTGCTGCAGCTGCAACTACAGCAAATGGAAGCAACAGGTTGAAGGCTGAGAAATCTGAAATGAAGAAGGGGAAGAAGTTGCATAGCAAAGGGAAAAAGTCCAAAACTGAGGGTGCACCAGCACTGTTGAAAAAGAAGCGTAAACCTGCCAAGAATAGAAAGAGGTTTCGTGCATTTGAGGATTTGACAGTAAGATTGAGCAACAACTCGGCTGTTCAACAAGTTTTCCCTCAGGATGAAAAAGAGGCTGCAATCTTGCTCATGGCTTTGTCTCATGGATTACTTCATGGCTTCCCCTCAGATCTTTATATCACTTAG 921 0.4126 MIPTYRYSVSSPMLIDLNEEDHTHKQPSSLSTSILFNPDQDQGGFCYWESKHFQSDEEAQKIVPSSGSWDHPVEKIENRSDLKLRVWKKEEGCDNLKGEDSSTMSSKMRMVRKMIVSDETDSDIADISSSKQIKYKKKNPELSPLVTDDSNCNSSSNQNSVPLRVCVDCHTTKTPLWRSGPKGPKSLCNACGIRQRKERRAIAAAATTANGSNRLKAEKSEMKKGKKLHSKGKKSKTEGAPALLKKKRKPAKNRKRFRAFEDLTVRLSNNSAVQQVFPQDEKEAAILLMALSHGLLHGFPSDLYIT* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2405 306 Gene3D - 164 202 IPR013088 GO:0006355|GO:0008270
Pvu9g2405 306 CDD ZnF_GATA 165 197 IPR000679 GO:0006355|GO:0043565
Pvu9g2405 306 ProSitePatterns GATA-type zinc finger domain. 166 191 IPR000679 GO:0006355|GO:0043565
Pvu9g2405 306 SMART GATA_3 160 211 IPR000679 GO:0006355|GO:0043565
Pvu9g2405 306 MobiDBLite consensus disorder prediction 209 252 - -
Pvu9g2405 306 Pfam GATA zinc finger 166 200 IPR000679 GO:0006355|GO:0043565
Pvu9g2405 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 298 - -
Pvu9g2405 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 163 200 - -
Pvu9g2405 306 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 298 - -
Pvu9g2405 306 ProSiteProfiles GATA-type zinc finger domain profile. 160 196 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2405 Pvu-Chr9 34352327 34354236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2405 77 298 C2C2-Gata Transcription Factor Family AT4G26150 38.367 8.01e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu9g2405 GATA 2.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2405 - - vun:114162648 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1421 3 32935145 32936991 Pvu9g2405 9 34352327 34354236 PCT