Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2394 ATGCACCCCATGGAATATCTCTTCTCTCTTCCTGTACCCGCCAGGGCTGATATTATCCAATTTCTGGTGCAGTCTTTTGGCTGCAGTTACATTTGTCTCTGGGCATATGATTCCATTTCACCCAATCGTTTGTGCTTCTTGGATGGTATCTACAATGTAACAAACGACCAACCAGGCTCTAGTTTGGGGACTGTGGCACAGCAACTTTTCAGTCAGTTCCGGACACTAACATTTGATGTTAACGATGACCGTGTTCCTGGACTAGCATTTAGGAACCAGCGTCCCTACCTAGAGTTGCAACGATTGGAACTTCTAAGACTTGCATCAACAGAAATACAAACACAATTCTTCCAGGAGGCAAGGATTAAGACTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAACATGTCCCAGGTTGACATTCAAACAGCACTGAGGAGTTTGTTTCCTGGAGATTTTTCTGGTGGACAGGCCCAGAAAATTGATCAAAACCCTCCTACATCATCTTCATCTTCTTTGAGATCAATATCCACAGGTAGCCCTGAATACTCTTCTCTTCTGTTCAGTATTCCAGGCAGTTCTCAACCCCACTTTCCTGAGACACTTGGAGGAGCAACAATGTCCCCAATGGCAAACACAGCCATTCAAGCATTGGCACAAGGCCCTCTAACAACACAAAGTGAACATGATGCAATGATGAGAGCAATCCTCCATGTTATATCTCCAACTTCTCATCACCACCAAAACTTCCATCCAGACACCAGTGCTTTCCAGAGTTACAGATCAGACATTGCTTCCAACATGGCTCCCAATATCAGAAGGCAAAGCCTCATGAAGAGATCTTTTGCATTCTTTGGAAACTTAAATATTATGAGAATGAGAGAACGCATTCAAGCAACGTCCCGTCCCTCAAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCACTCAGAGCACTACTTCCTCCAGGAACTAAGAAAGATAAAGCGTCTATACTAATAGCAGCAAAGGACACATTGAGCTCTCTAATGGCTGAAGTTGATGAACTAAGTAAAAGGAATGAGGGATTGACATCACTTTTGCCATCCAAAGAACCTACAACTGAAGAAACCAGGGTTAGATTATCTCCAAATGAAAGACTAGGTGTCCGAGTTTCACATGTAGCAGAATCAAGCTCGTCACAGGATCGAAGGGTGGAGTTGCAAGTGAATGTGAGAGGACAAGTTTCTCAAATTGATTTGTCAATCTGCTTATTGGAATTCTTAAAACGGTGTCTCAACGTGAGCTTGGTTTCCATGGACGCAAACACCCACATTGCACAAGGGAATAATGCTCTTCATCAACTAACCTTCAGATTAAGGATTATTCAGGGAAGTGAATGGGACGAGTGTGTCTTCGAGGAAGCAGTGAGAAGAGTGGTTGGTGAGTTGGCACAGTACGAAGAGGACCAATAA 1506 0.4336 MHPMEYLFSLPVPARADIIQFLVQSFGCSYICLWAYDSISPNRLCFLDGIYNVTNDQPGSSLGTVAQQLFSQFRTLTFDVNDDRVPGLAFRNQRPYLELQRLELLRLASTEIQTQFFQEARIKTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPGDFSGGQAQKIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGSSQPHFPETLGGATMSPMANTAIQALAQGPLTTQSEHDAMMRAILHVISPTSHHHQNFHPDTSAFQSYRSDIASNMAPNIRRQSLMKRSFAFFGNLNIMRMRERIQATSRPSNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKDTLSSLMAEVDELSKRNEGLTSLLPSKEPTTEETRVRLSPNERLGVRVSHVAESSSSQDRRVELQVNVRGQVSQIDLSICLLEFLKRCLNVSLVSMDANTHIAQGNNALHQLTFRLRIIQGSEWDECVFEEAVRRVVGELAQYEEDQ* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2394 501 Coils Coil 350 377 - -
Pvu9g2394 501 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 494 - -
Pvu9g2394 501 Gene3D - 310 383 IPR036638 GO:0046983
Pvu9g2394 501 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 494 IPR044658 -
Pvu9g2394 501 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983
Pvu9g2394 501 Coils Coil 317 337 - -
Pvu9g2394 501 MobiDBLite consensus disorder prediction 161 184 - -
Pvu9g2394 501 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 375 IPR036638 GO:0046983
Pvu9g2394 501 SMART finulus 317 366 IPR011598 GO:0046983
Pvu9g2394 501 Pfam Helix-loop-helix DNA-binding domain 315 360 IPR011598 GO:0046983
Pvu9g2394 501 CDD bHLH_AtbHLH_like 316 368 IPR045239 -
Pvu9g2394 501 MobiDBLite consensus disorder prediction 163 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2394 Pvu-Chr9 34153499 34157460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2394 15 496 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.379 2.04e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g2394 HLH 6.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2394 - - gmx:100807098 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2394 9 34153499 34157460 Pvu9g2394 9 34153499 34157460 ECH
Pvu3g1406 3 32725241 32727775 Pvu9g2394 9 34153499 34157460 PCT