Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2368 ATGCTCACGTGCATAGCACGGCCCAAGAAACCCGACTCGGCCACCGACGATCCGAGTTCGCGCGGCGCCAAATCGCTGACATGTCAGCTGAAGGAGATGGCGCTGAAGGCGTCGGGGTCGTACAAGCAGTGCGGTCCGTGCGCGCCCTCGCAGAGTCGGCTGAGTCGCGGCGGCGAGTCCGATTCGGAGTCGTCTCGGCGGCGGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATATCGAGCGGCGAGGGGACGCCGAGCTCCAGCGGGAGGAGGACGATGGTGGTGCTGGAAGAGGAGGCGGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCCGGGGTTCTGATCACGTTCGTGTCGCTTCCGCGTGGCGGGAACCACCTCAAACGGATTCGGTTCAGTCGCGATGTATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTACGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTTTCCTCTTCCAACTCCACCAAGGTCTGAAGACGAGAGTTCGAAGCGTGAATCAATAGAAGAGATCCCTGTGACACCTCCACTGAGCAGGGAAAGGCCACCTTGTAATTTATTCCGTGGAGGAGGAGGAGGAGGAGGAGGGGTGGCAATTGGGTACTCATCCTCTGATTCGTTTGATCAGCAGTCAATGCAATCCCGGCATTACTATGATCCAAGTGGTGTGAACTCAACCCCGAAGGTGTCCACCATTAGTGCTGCTGCCAAGACAGATATCTCATCAATGGATGCTGATGCTTCTATTAGAAGTAGCTCATCTAGAGAAGAGGCTGATCGCTCTGGCGATCTATCAATCAGTAATGCCAGTGACCTGGACGCTGAATGGGTTGAGCAGGATGAACCTGGGGTTTACATTACCATCAGAGCTCTCCCAGGTGGCAAGAGGGAGCTCAAACGAGTAAGGTTCAGTCGAGAAAAGTTTGGGGAGATGTATGCCAGACTGTGGTGGGAAGAGAACCGTGCCAGAATACATGAACAGTACTTGTGA 1047 0.554 MLTCIARPKKPDSATDDPSSRGAKSLTCQLKEMALKASGSYKQCGPCAPSQSRLSRGGESDSESSRRRWGKEMEARLKGISSGEGTPSSSGRRTMVVLEEEAEPKEWVAQVEPGVLITFVSLPRGGNHLKRIRFSRDVFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPPRSEDESSKRESIEEIPVTPPLSRERPPCNLFRGGGGGGGGVAIGYSSSDSFDQQSMQSRHYYDPSGVNSTPKVSTISAAAKTDISSMDADASIRSSSSREEADRSGDLSISNASDLDAEWVEQDEPGVYITIRALPGGKRELKRVRFSREKFGEMYARLWWEENRARIHEQYL* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2368 348 MobiDBLite consensus disorder prediction 222 246 - -
Pvu9g2368 348 MobiDBLite consensus disorder prediction 40 93 - -
Pvu9g2368 348 MobiDBLite consensus disorder prediction 170 202 - -
Pvu9g2368 348 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 348 - -
Pvu9g2368 348 MobiDBLite consensus disorder prediction 1 23 - -
Pvu9g2368 348 MobiDBLite consensus disorder prediction 44 58 - -
Pvu9g2368 348 ProSiteProfiles BRX domain profile. 293 348 IPR013591 -
Pvu9g2368 348 ProSiteProfiles BRX domain profile. 105 160 IPR013591 -
Pvu9g2368 348 Pfam Transcription factor regulating root and shoot growth via Pin3 105 159 IPR013591 -
Pvu9g2368 348 Pfam Transcription factor regulating root and shoot growth via Pin3 293 347 IPR013591 -
Pvu9g2368 348 MobiDBLite consensus disorder prediction 59 78 - -
Pvu9g2368 348 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 348 IPR044532 -
Pvu9g2368 348 MobiDBLite consensus disorder prediction 261 285 - -
Pvu9g2368 348 Pfam Transcription factor BRX N-terminal domain 24 47 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2368 Pvu-Chr9 33845161 33851491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2368 1 348 Major Intrinsic Protein MIP AT1G31880 41.795 7.83e-82 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2368 - - pvu:PHAVU_009G229100g 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2368 9 33845161 33851491 Pvu9g2368 9 33845161 33851491 ECH
Pvu3g1377 3 32363578 32369654 Pvu9g2368 9 33845161 33851491 PCT