LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g2366	ATGGGTGATGTTCTAAGCCCTTTCACAGTCTCATCCCCTCCTCCACCCTCTTCCTCTTCCAAGAACAACACCATGCCCATGTTGTACTACGGTCTTGTGGTGGTCGGAACCGCCGCCATAGTGCTCGCCATATACAACCTCCTTCTCCTCAGACGCGGCCACGCGCGGTCGCCGCCTTCCGGGGCGAGTTCCAACGGTTTGGGAACAACAATTGACGGCGTTTCGGAGATAACGAGGAGGTTGGAGAGTCAACAAAGACAGTTGCTGTCGAGCTTCAAGTACAAGAAAGAAGAGGTCGGAAAAGAAAAAAAAGAAGAAGAAGAAGAAGAAGATTTTGAATGCCCTGTTTGCTTGTCGGTTTATGAAGAAGGAGAAGAAGTGAGGAAGCTTCCACAGTGCAAACACTATTTCCACGTTCTTTGCATAGACATGTGGCTCTTCTCTCACTTCGATTGCCCCATTTGCAGAACACCCGTTCTCGACAATTCTCTCCATGCCTTCATTGAATCCGGTCGCATCTCATAG	525	0.4952	MGDVLSPFTVSSPPPPSSSSKNNTMPMLYYGLVVVGTAAIVLAIYNLLLLRRGHARSPPSGASSNGLGTTIDGVSEITRRLESQQRQLLSSFKYKKEEVGKEKKEEEEEEDFECPVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLFSHFDCPICRTPVLDNSLHAFIESGRIS*	175

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g2366	174	Pfam	Ring finger domain	113	156	IPR001841	-
	Pvu9g2366	174	ProSiteProfiles	Zinc finger RING-type profile.	114	156	IPR001841	-
	Pvu9g2366	174	PANTHER	RING-H2 FINGER PROTEIN ATL51-RELATED	11	161	IPR044675	-
	Pvu9g2366	174	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	86	164	IPR013083	-
	Pvu9g2366	174	SMART	ring_2	114	155	IPR001841	-
	Pvu9g2366	174	SUPERFAMILY	RING/U-box	102	161	-	-
	Pvu9g2366	174	PANTHER	RING-H2 FINGER PROTEIN ATL52-LIKE	11	161	-	-
	Pvu9g2366	174	MobiDBLite	consensus disorder prediction	1	23	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g2366	Pvu-Chr9	33824314	33825355	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g2366	16	159	C3H Transcription Factor Family	AT1G04360	30.464	7.06e-19	80.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g2366	-		-	gmx:102662517	185.652

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu3g1374	3	32328065	32328550	Pvu9g2366	9	33824314	33825355	PCT