Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2324 ATGGTGAAGCCTGGTGGCGTGGAAAAGTCTGCGGAGGAGCGAAGCAGTACATCGTACAGAGGAGTACGGAAGAGGAAGTGGGGAAAATACGTTTCGGAAATTAGGCTGCCCAACAGCCGTCAAAGGATTTGGTTGGGTTCCTACGACAGCGCCGAGAAGGCGGCGCGCGCGTTCGATGCGGCCATGTTCTGTTTACGTGGCAGCGGCGCCAAATTTAACTTCCCGAGTGACCCCCCCAACATTGCCGGCGGGAGGACCATGACCCCCTCTCAGATTCAGATCGCTGCGGCCCGTTTCGCCAATTCGGAGCCCCAGACAGATTGTTCGGGTCAGCAACCAATGGAGTCTTTAGCTTCGGACGAGGAAACGGCGTCGTTGAGGTTGGAGTCGTCGTCTCCTCCTCTCTCCGACGTGTCGGTTCAGAACGACGCCATATTCCAAACCGGGTCATTTCCCGACCCGTTTTCGGAGTTTGGGTCGAGCAGTTTCGTCCCCGAGTTCTCTGATTTTCCAAGTTTCGACGATTTCAGCCGCGATTTCTTCATGCCGGAGCTTCCAAGTTTCGATTACGGAGAAGAAAACGTGGATGGGATGATAATTCAGGACTCCTTCTTATGGAATTTCTAA 627 0.5423 MVKPGGVEKSAEERSSTSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGAKFNFPSDPPNIAGGRTMTPSQIQIAAARFANSEPQTDCSGQQPMESLASDEETASLRLESSSPPLSDVSVQNDAIFQTGSFPDPFSEFGSSSFVPEFSDFPSFDDFSRDFFMPELPSFDYGEENVDGMIIQDSFLWNF* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2324 208 MobiDBLite consensus disorder prediction 1 24 - -
Pvu9g2324 208 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Pvu9g2324 208 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Pvu9g2324 208 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Pvu9g2324 208 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Pvu9g2324 208 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Pvu9g2324 208 CDD AP2 19 75 IPR001471 GO:0003700|GO:0006355
Pvu9g2324 208 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 6 208 - -
Pvu9g2324 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 208 - -
Pvu9g2324 208 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Pvu9g2324 208 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2324 Pvu-Chr9 33327983 33329052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2324 17 208 AP2-EREBP Transcription Factor Family AT1G19210 50.746 2.60e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu9g2324 AP2 2.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2324 - - gmx:100802508 303.523