Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2319 ATGGCGCTGCAATTTCTTCTCCTTCTGCTCGCTGTTGCTGCTCATGGACTCGCTTCCAATGCGACACTGAACGAGACTTGCGGATACTTCGATGCTTCTCTCAGTAGAGATACAAATGTCCCTTGCCCAATTGGTTGGGTTATGGCCCCTAACAAGACCAAGTGCTTTCTTCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACCTGTTGTAGTAAGTATGGTGGGCATTTAGCGTCATTGACATCACTTCAGGAGCTACAATTTGCTCAGAGCCTATGTGGTGAATCTGTGAATAGTTGCTGGATTGGTGGACAAAGATTCAACACTACAGCTGGTTATCAGTGGATGTGGTCTGACAATTCACCAGGGAATAACTCCATATTTCCATTGGAAGATGTCTTTCCCCATTGTAATGGAACTGAACTATCCTGTCATAAAAACAGTACAGACAATTTGTGCACGGTAATGACTAATAATTCAAACTCTCTCATGAGTGAGAGATGCGACAATCCTCACTCTTCTCTATGTATACTTGATATAGATGCTGCATGTAACCGTATGCACTGCCATAGGGATTATTACCTTATCATCCTCATAGTGGTGAGTGCCTTGATACTCTCCACAACATTAGCAGTGGTAGTTTGGCTTCTTGTTTATAAGCGGGGAAAAAAAAGAAGGCGGTCTAGAAAAATATCTATTCCAGGAGCTTCTCTTCCATCATGGAAAGTCTTCACCAAAGAGGAATTAAGGTCAATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGCGATACCAAGACTGGTGGTACATACAGTGGGGTTTTATCAGATGGTTCAAGGGTTGCAGTTAAGAGATTAAAGAGGACAAGCTTTCAGAGGAAAAAGGAGTTTTATTCTGAAATTAGCAGGGTTGCTAGGCTTAGATATCCCAATCTGGTTGCTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGTCCCTTGGATAAATGGCTACATCACATACCTAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCGACAACGCTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTGGTGCATCGAGATATACGTGCAAGCAATGTACTGCTGGATGAGGAGTTTGGAGCACGGCTGATGGGTGTTGGTCTGTCCAAGATTGTGCCGTACGAAGTAATGCATGAGAGGACTGTGATGGCAGGTGGAACTTCTGGATATCTTGCTCCAGAGTTTGTTTATAGAAACGAGTTTACAACAAAGAGTGACGTATATAGTTTTGGCGTCCTACTACTTGAAATAGTAAGTGGACGTAGACCTACACAGGCAGTTGATTCTGTTGGTTGGCAGAGTATCTTTGAATGGGCAACACCTCTTGTGCAAGTTCATCGCTACCATGAACTCTTGGATCCTCATATAACTTCATCCTCTTCTAGCATCATCCCAGAGGCTAGTACCATCCAAAAGGTGGTTGACCTTGTTTATTCCTGCACGCAGCATGTTCCTTCTATGCGCCCTAGAATGTCTCATGTTGTTCACCAGCTGCAACAGATTGCCCAACCACCTGCAAAGTAA 1638 0.4389 MALQFLLLLLAVAAHGLASNATLNETCGYFDASLSRDTNVPCPIGWVMAPNKTKCFLHVGRPQSWNDSETCCSKYGGHLASLTSLQELQFAQSLCGESVNSCWIGGQRFNTTAGYQWMWSDNSPGNNSIFPLEDVFPHCNGTELSCHKNSTDNLCTVMTNNSNSLMSERCDNPHSSLCILDIDAACNRMHCHRDYYLIILIVVSALILSTTLAVVVWLLVYKRGKKRRRSRKISIPGASLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLSDGSRVAVKRLKRTSFQRKKEFYSEISRVARLRYPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGARLMGVGLSKIVPYEVMHERTVMAGGTSGYLAPEFVYRNEFTTKSDVYSFGVLLLEIVSGRRPTQAVDSVGWQSIFEWATPLVQVHRYHELLDPHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPAK* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2319 545 ProSiteProfiles Protein kinase domain profile. 259 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g2319 545 Pfam Lectin C-type domain 62 178 IPR001304 -
Pvu9g2319 545 ProSiteProfiles C-type lectin domain profile. 51 179 IPR001304 -
Pvu9g2319 545 SMART tyrkin_6 268 536 IPR020635 GO:0004713|GO:0006468
Pvu9g2319 545 Gene3D Transferase(Phosphotransferase) domain 1 335 541 - -
Pvu9g2319 545 Gene3D - 17 181 IPR016186 -
Pvu9g2319 545 SUPERFAMILY Protein kinase-like (PK-like) 232 537 IPR011009 -
Pvu9g2319 545 SMART CLECT_2 42 179 IPR001304 -
Pvu9g2319 545 Gene3D Phosphorylase Kinase; domain 1 237 334 - -
Pvu9g2319 545 ProSitePatterns Tyrosine protein kinases specific active-site signature. 381 393 IPR008266 GO:0004672|GO:0006468
Pvu9g2319 545 Pfam Protein tyrosine and serine/threonine kinase 269 536 IPR001245 GO:0004672|GO:0006468
Pvu9g2319 545 PANTHER - 2 541 - -
Pvu9g2319 545 CDD CLECT 54 178 - -
Pvu9g2319 545 SUPERFAMILY C-type lectin-like 35 179 IPR016187 -
Pvu9g2319 545 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2319 Pvu-Chr9 33215255 33220426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2319 72 542 Receptor kinase-like Gene Family AT1G52310 68.880 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Pvu9g2319 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2319 - - vra:106762676 1031.55