Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2307 ATGTTCAATCCTCAAACCTCGCCACCGCCGCTGCCGGTGATGACTCCGCCGGCAACCCCCCTTAACTATGAAACGGCGTCGCACAAGAAAAATCGCAGAACCACCGGAGTTCCCGTTCCTCTTCCTCATTCAGTGGAAGTGATCGACGTTGACGATTTCACTCCCTCCTCCTTTTTCACGCCCATTTCCTTCCTAGGCACGATCAAGTCAAACGTTGTCTCCATGGACCCACACGACGGTGCTTCCAAACCTGTCCACGTCGTCGACCTCTCCGACACCGAGGACGACGATGATCTCCGTGTCCTCAATTTCATTCCCACAAACACCTCCTTTGGCAAACGGAAAAGGTTCACGGGAGAATCCTCCGGCGCAGTCCCCTTCGACTGCGAAATCTGCACTGAAACCAAAACCTCCACGGAAGCTTTCTCCATCAACGGCTGCTGCCACGTCTACTGCAAACACTGCATCGCTCTCTATGTCGAATCGAAGCTCCAGGATAACGTCGTCAACATAGGCTGCCCTGTGCCGCGATGCAGGGGATTACTGGAAGCGGAAGATTGCCGCTCGATTCTCGCCCCTGAGATTTTGGATCGGTGGGGTAAAGCGCTGTGCGAGGCGGTGATTTCTGTGGAGGAGAAGTTCTATTGTCCTTTTCCAGATTGCTCTGTGCTGTTGATTCGCGACGAGAAGGATGAGGGTATCAGAGAATCGAATTGTCCAAACTGTCGGAGGATGTTCTGTGCGCTGTGTAGAGTACCCTGGCACGAGGACATGCCCTGTGAGGAGTTTCAAAAGCTGAACGCCGAAGAGAGGGGAAGAGAAGATGTGATGTTGAGAAACCTTGCTAAGCAAATGATGTGGAAGAGATGCCCCACTTGTGGGTTTTACGTTGCCAAAACCTCTGGCTGCATGTACATGAAATGCAGGTGTGGGAGTGCCTTCTGTTACAATTGTGGGGTTCCTAACTTAACTCCCTTCCATCACTGCATGTCCTGTAGACGGTAA 1005 0.5234 MFNPQTSPPPLPVMTPPATPLNYETASHKKNRRTTGVPVPLPHSVEVIDVDDFTPSSFFTPISFLGTIKSNVVSMDPHDGASKPVHVVDLSDTEDDDDLRVLNFIPTNTSFGKRKRFTGESSGAVPFDCEICTETKTSTEAFSINGCCHVYCKHCIALYVESKLQDNVVNIGCPVPRCRGLLEAEDCRSILAPEILDRWGKALCEAVISVEEKFYCPFPDCSVLLIRDEKDEGIRESNCPNCRRMFCALCRVPWHEDMPCEEFQKLNAEERGREDVMLRNLAKQMMWKRCPTCGFYVAKTSGCMYMKCRCGSAFCYNCGVPNLTPFHHCMSCRR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2307 334 SMART ibrneu5 197 260 IPR002867 -
Pvu9g2307 334 SMART ibrneu5 270 332 IPR002867 -
Pvu9g2307 334 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Pvu9g2307 334 MobiDBLite consensus disorder prediction 1 38 - -
Pvu9g2307 334 SUPERFAMILY RING/U-box 127 206 - -
Pvu9g2307 334 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 333 IPR031127 GO:0004842|GO:0016567
Pvu9g2307 334 Pfam IBR domain, a half RING-finger domain 205 260 IPR002867 -
Pvu9g2307 334 Pfam IBR domain, a half RING-finger domain 278 332 IPR002867 -
Pvu9g2307 334 SUPERFAMILY RING/U-box 271 333 - -
Pvu9g2307 334 SUPERFAMILY RING/U-box 203 265 - -
Pvu9g2307 334 Gene3D - 258 334 - -
Pvu9g2307 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 209 IPR013083 -
Pvu9g2307 334 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 81 333 - -
Pvu9g2307 334 MobiDBLite consensus disorder prediction 1 17 - -
Pvu9g2307 334 ProSiteProfiles Zinc finger RING-type profile. 129 177 IPR001841 -
Pvu9g2307 334 ProSiteProfiles TRIAD supradomain profile. 125 334 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2307 Pvu-Chr9 33062782 33064905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2307 129 321 C3H Transcription Factor Family AT2G19610 30.882 1.50e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2307 K11975 - gmx:100807821 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2307 9 33062782 33064905 Pvu9g2307 9 33062782 33064905 ECH