Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2305 AATCCTGTATCGTCGGACATCGCTTCGCCTTCCGTCGTTGGCTCTCTCCCGGCGTTCTCCTTCTCTTCCGTGACGCGCCGCTCCGCCGCCTCCGGCGGCGGCGCGGACTGCGCTGTGTGCTTATCGAAGTTTGAGCAGCACGACCTTCTCCGCTTGCTACCTCTCTGCTGCCACGCTTTCCACGCTGAATGCATCGATACGTGGCTCCAATCGAACCTCACGTGTCCGCTCTGCCGATCCGCCGTCGGTGCGTCGGAGTCCGACCTCGCGAAGGTTTTTCGCTCGTCGTCTGCCGGAGGCGGCGAGAGCTTTCGGCTTGAGATAGGGAACATCAGCAGCAGCGGCCGCAACTCCACGGCGGCCGGCGAGGAAATGCGCGGGAGGTCCTATTCCGTTGGCGCGTTTGAGTATTTCATCGACGAGGAGGCTGAGGCTGAGATTGAGGTTGCGTTCGGTTATGCTATCCGGAGAAGCGTATCTGGCGAGAAACACGACGGTGCTACGGTGGAGGCTGCGGCAGATTCTCTGCCGAGCTTGGCTGCTGAGGTAGGGCGTGGAGGAAGTAATAACAGTAGTGGCTGGTTGAAGGATTACGTTGACCGTCTTTCGAATACCATGTCGTTTCGGAGTTCCGGAAGGTTCTTCACAGGGAGTAGTCGCCGAACCGACGTCGCTCAGGGTGGAGATTACGATTACGAAGCCAACCGTTTGGGGGATGAAATCGGTGAAATGTTTCGATGGATTTCGGGGATTTGA 756 0.5847 NPVSSDIASPSVVGSLPAFSFSSVTRRSAASGGGADCAVCLSKFEQHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSAVGASESDLAKVFRSSSAGGGESFRLEIGNISSSGRNSTAAGEEMRGRSYSVGAFEYFIDEEAEAEIEVAFGYAIRRSVSGEKHDGATVEAAADSLPSLAAEVGRGGSNNSSGWLKDYVDRLSNTMSFRSSGRFFTGSSRRTDVAQGGDYDYEANRLGDEIGEMFRWISGI* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2305 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 88 IPR013083 -
Pvu9g2305 251 ProSiteProfiles Zinc finger RING-type profile. 37 79 IPR001841 -
Pvu9g2305 251 SMART ring_2 37 78 IPR001841 -
Pvu9g2305 251 Pfam Ring finger domain 36 79 IPR001841 -
Pvu9g2305 251 CDD RING-H2_PA-TM-RING 36 79 - -
Pvu9g2305 251 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 239 - -
Pvu9g2305 251 SUPERFAMILY RING/U-box 33 84 - -
Pvu9g2305 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2305 Pvu-Chr9 33041592 33042347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2305 11 106 C3H Transcription Factor Family AT4G28890 47.917 1.39e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2305 K10663 - gmx:100804962 332.798