Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2300 ATGGATAAAATCAGCCATTGTTGTCTTTTTCTTCATCTGGGACTGAGAATACCACAATTGGTGGTAACCCTTTTAGTGTTAGGAAGGGCACTGTCGTGGCTCACCATTTCTGATGCTCACAATGAATGCAGTCTTACTAGATATCCCAATCTATGTGCTGAAACCTTGATGCAATCTGGTTCATCCAATCACACTGTTGATAACATTTTGGCTCTTGTCAACAAAACCATATTAGAAACCAACTTGCCAAGTTCATATTTTGCAGAATTCAAGACTGCTGATGCTCATGTAGCTCATTCTGTTGTTGCAGATTACTGTGAAGAGCTAATGAGCATGTCACTGAAAAGGTTAGACCAATCCCTGAGAGCACTGAAATCCCCTGGAAGAAACAACAATGACATCCAAACATGGCTAAGTGCTTCCTTAACTTTCCAACAATCTTGTAAAGACTATGCACATGCACATGCCACAGTACTCTCTGCAGATGGCCTTATGCAAAGGATGTGCAACAAGATGGAGTTTCTTTCTCAACTGGGAAGCAACTCATTAGCTCTTGTTAACCATATGAGCACAAAAGCTAGCCACAAAGTTGGCACTAATGAAGAGGAAGATGAATTTCCTAAGTGGGTATCAGCCAAAGGACGTAAACTGCTTCAAGGAGGCACCATAAAAGCAAATGCCATAGTTGCACAAGATGGTTCAGGAAACTACAAGACAGTTTCTGACGCCATTAAAGCAGCTTCGGGAAAACGGTTTGTGATTTATGTTAAAGAAGGGATTTATAAGGAGAAGATTCGCACCAGCAAGGATGGTATCACCTTGGTTGGAGATGGAAAATACTCTACTCTTATTGTTGGAGATGACAGTGTTGCCAAGGGTTCTATCTTACCTGACTCAGCCACATTTACAATCACCGGCGATGGCTTCATCGCACGGGACATCGGATTCCAGAACAACGCGGGCCCACAAGGCGAACAAGCGGTGGCTCTGAACATGGCCTCCGACCGTTCCGTCCTCTACCGGTGCAGCATAGCTGGGTACCAAGACACCCTCTACGCCCACGCCCTCCGCCAGTTCTACGCAGAATGCGACATTTACGGCACCATCGACTTCATCTTCGGCAACGCCGCCGCCGTCTTCCAGCGCTGCAACATCCTCCTCCGCCGCCCCCGTGGATCCAGCTACAACGTCATTCTGGCCAACGGCCGAACTGACCCCGGCCAGAACACCGGTTTTTCCATTCACAAGTGCAGCATATCGGCCACCTCAGACTTTTCTTCTGTGAAGCACTCGTATGGTTCGTTTCTGGGGAGACCCTGGAAGGAGTATTCGAGAGCGGTGGTGATGGAGAGTAGAATCGACGATACCATTGCGGCGAGAGGGTGGGTGGAGTGGCCTGGGTATGGAAGCTCTGTGTTGAAGAATTTGTATTTCGCGGAGTATGGTAATGAAGGAGCTGGTGCTGGAACTGCAAAGAGGGTGCAGTGGCAGGGATTTCGTGTTCTTCAGCCGCAAGAGGCTGGGAAATTCACTGTTGCTACTTTTATTGCCGGAAACTCGTGGATTCCCTCCACCGGAGTTACTTTCATTTCAGGGCTTAATTAA 1605 0.4754 MDKISHCCLFLHLGLRIPQLVVTLLVLGRALSWLTISDAHNECSLTRYPNLCAETLMQSGSSNHTVDNILALVNKTILETNLPSSYFAEFKTADAHVAHSVVADYCEELMSMSLKRLDQSLRALKSPGRNNNDIQTWLSASLTFQQSCKDYAHAHATVLSADGLMQRMCNKMEFLSQLGSNSLALVNHMSTKASHKVGTNEEEDEFPKWVSAKGRKLLQGGTIKANAIVAQDGSGNYKTVSDAIKAASGKRFVIYVKEGIYKEKIRTSKDGITLVGDGKYSTLIVGDDSVAKGSILPDSATFTITGDGFIARDIGFQNNAGPQGEQAVALNMASDRSVLYRCSIAGYQDTLYAHALRQFYAECDIYGTIDFIFGNAAAVFQRCNILLRRPRGSSYNVILANGRTDPGQNTGFSIHKCSISATSDFSSVKHSYGSFLGRPWKEYSRAVVMESRIDDTIAARGWVEWPGYGSSVLKNLYFAEYGNEGAGAGTAKRVQWQGFRVLQPQEAGKFTVATFIAGNSWIPSTGVTFISGLN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2300 534 Pfam Pectinesterase 226 519 IPR000070 GO:0030599|GO:0042545
Pvu9g2300 534 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Pvu9g2300 534 Pfam Plant invertase/pectin methylesterase inhibitor 41 185 IPR006501 GO:0004857
Pvu9g2300 534 PANTHER PECTINESTERASE 27 532 - -
Pvu9g2300 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 190 IPR035513 -
Pvu9g2300 534 Gene3D - 220 533 IPR012334 -
Pvu9g2300 534 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 188 IPR006501 GO:0004857
Pvu9g2300 534 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 27 532 - -
Pvu9g2300 534 SMART PMEI_2 34 185 IPR006501 GO:0004857
Pvu9g2300 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Pvu9g2300 534 SUPERFAMILY Pectin lyase-like 223 532 IPR011050 -
Pvu9g2300 534 CDD PMEI-like_3 43 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2300 Pvu-Chr9 32995004 32998545 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2300 17 533 Carbohydrate Esterase AT2G45220 43.156 1.57e-129 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2300 K01051 - gmx:100795439 857.825