Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2261 ATGGAGGCTCAATTAGAGGGTAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTACGCAACTGAATTCAGTGCCATCAGATTGTAGGAGTCGCCAGCCGTTTCCTGCTGATCCTGAAATTCTTGCAATTGGTGGTGCTTCTAACAATTTGTCTTCTGCTCATGATGATGTTAACCTTGCGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTGCTGATGAAGGAGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGTCCAAGTATACCCTATCATAGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGGGAGTACTTTGAACCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAGTGCGAAGGATTATCACCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCAAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTTGCAGGCCACAATAAGAGAAGGAGAAAAACGCATCCTGATGCTAGTGTAGTTAATGACGGCTCTGTAAATGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTCAAATGGCTCAGATAATATGACAAGCCAGGATGTTCTATCTCATCTGCTGAGGAACCTGGCAAGTGTGGCTGGTACAATTAATGGGAGAAATATAGTGTCTTTATTGGAGGGATCTCAAGATTTGGTTAAAGCTGGAACTTCTGGAACTGCACATAATGTTCCCAACACAAATTCTAGTGGTCCTGAAACGTCCAGACCTTTTGATACTTCTACCAAGATGGATAATGGTCTAATCAGTCAGGACCCTCCAGAGTCTATGGTACAATGTGAGATGACTCCTGCTAATGGTATGACTAAAAGATTTATAGCTTCGGGCAGTGATGGGGTAGGAAGTTCAAAATATCCTTCATTACCACAGCCATCAAATGTACTTCTGTCACAGGATAGTCTTCCACCCCATTCAGTCTCAGCAGAGCCTACGGTTGGAAGAATTGGATTAAGTAATATTGACCTGAATAGTGCGTATGATGATGTACAGGATTATGTTGAGAACACGAGAAATTCTCGTCCTCCGTTGCCTTCAGGGAACGGGTCCCTTGATCATCCTTTATGGGTTCAATGTGATTCTCTCAAGTCAAGTCCACCACAGACGAGTAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTCCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCATAGTCCCACTGAGATAGAGAGCTATATAAGGCCTGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCCGCTTGGGAAGAGCTATGCTATAATCTAGGATCCAGCTTGAGAAAACTTGCTACGCCGAATGATTCTTTTTGGAGAACAGGATGGATATATACAAGAGTGCAGCACTCAGTAGCTTTTCTGTATAATGGTCAGGTGGTCATAGATGTACCATTGCGATTCAAAAGTCCACAGAATTGTCAGATTTTTTGTGTTAAACCACTTGCTGTTTCTTCAAGTTCTTGTGTTCAATTTATTGTGAAAGGATTCAACCTTTTGCTGTCCAACACCAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAAGAAAGTTGTTATGATTTGGTTGATGCTGATGCTGCCATTGGACGTCATGAGCTTCAGCATCTGAGCTTCTCTTGTTGTATACCAAATGTGGCTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAAGCTGGAGAATGTCATTGAGACAGCTGAGACTGCTGATGACATCCAAATGAAAACTAAACGAATGGAAGAAAAGACTCAAGCATTGTATTTCATACAGGAAATGGGTTGGCTCCTTCACAGAAACCGTATGAAAGTTCGGCTAGGTCCTGTGGCACCTGTACAAGATTGCTTCCATTTCAATCGGTTCATGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAGGACACTGTTGATATAGGAGAGCATACCTCAGTTGAGTTAGCATTGTTAGAGATGGATCTTCTGCACAAAGCGGTAAAAAGAAATTGCAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCAGTTAATGCTTCAGATGGTGGAAACAGTAAAGAGCAGCAAGTCAGCAAGTCCCCTAACAGATTCATATTCAGACCTGATTCAGTTGGGCCGGCTGGGTTGACTCCCCTTCATGTTGCAGCAAGTATACATGGTTCGGATAATGTATTGGATGCATTAACTGATGATCCAGGACTGGTGGGAATTGAGGCATGGAAAAGTGCTCAGGACACTACAGGTTTGACCCCTTATGACCATGCATCCCTGCGAGGCCACTACTCCTACATTCAACTTGTCCAGAGGAAAATAAGCAACACATGCAAAAGTGAACATGTGCTTAATATCCCAGGCACTCTTGTAGATAGTAACATAAAGCAGAAGCAATCAGATGGACATAAATCATCAAAAGTTTCAAGTTTGCAAACTGAGAAGATTGAAACAACAGCAATGCTGCGACATTGTGGGCTATGCCAGCACAAGTTGGCGTATGGTGGTGTGAAAACTGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTTGCCATTGCAGCTGTGTGTGTTTGCGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTCTATTATGTATTCCAGCCATTCAGTTGGGAATCATTGGAATATGGGTCCATGTAA 3096 0.4302 MEAQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTATQLNSVPSDCRSRQPFPADPEILAIGGASNNLSSAHDDVNLAEGRRELEKRRRGVADEGGVEMNDGAGSLNLNLGVQVYPIIEGEEKSGKKTKITGSTLNRAVCQVEDCRADLSSAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDGSVNEEKGSSYLLMSLLRILSNMHSNGSDNMTSQDVLSHLLRNLASVAGTINGRNIVSLLEGSQDLVKAGTSGTAHNVPNTNSSGPETSRPFDTSTKMDNGLISQDPPESMVQCEMTPANGMTKRFIASGSDGVGSSKYPSLPQPSNVLLSQDSLPPHSVSAEPTVGRIGLSNIDLNSAYDDVQDYVENTRNSRPPLPSGNGSLDHPLWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTVYLRLENSAWEELCYNLGSSLRKLATPNDSFWRTGWIYTRVQHSVAFLYNGQVVIDVPLRFKSPQNCQIFCVKPLAVSSSSCVQFIVKGFNLLLSNTRLLCALEGKYLVQESCYDLVDADAAIGRHELQHLSFSCCIPNVAGRGFIEVEDNGLSSCSFPFIVAEQEICSEICKLENVIETAETADDIQMKTKRMEEKTQALYFIQEMGWLLHRNRMKVRLGPVAPVQDCFHFNRFMWLVGFSMDHDWCAVMKKLLNIIFEDTVDIGEHTSVELALLEMDLLHKAVKRNCRPMVELLLKFVPVNASDGGNSKEQQVSKSPNRFIFRPDSVGPAGLTPLHVAASIHGSDNVLDALTDDPGLVGIEAWKSAQDTTGLTPYDHASLRGHYSYIQLVQRKISNTCKSEHVLNIPGTLVDSNIKQKQSDGHKSSKVSSLQTEKIETTAMLRHCGLCQHKLAYGGVKTALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSM* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2261 1031 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Pvu9g2261 1031 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1030 - -
Pvu9g2261 1031 MobiDBLite consensus disorder prediction 365 390 - -
Pvu9g2261 1031 Gene3D - 783 960 IPR036770 -
Pvu9g2261 1031 MobiDBLite consensus disorder prediction 302 340 - -
Pvu9g2261 1031 Pfam SBP domain 148 221 IPR004333 GO:0003677
Pvu9g2261 1031 Gene3D - 140 209 IPR036893 GO:0003677|GO:0005634
Pvu9g2261 1031 SUPERFAMILY Ankyrin repeat 802 916 IPR036770 -
Pvu9g2261 1031 MobiDBLite consensus disorder prediction 212 234 - -
Pvu9g2261 1031 MobiDBLite consensus disorder prediction 445 474 - -
Pvu9g2261 1031 MobiDBLite consensus disorder prediction 356 397 - -
Pvu9g2261 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1030 IPR044817 GO:0003677
Pvu9g2261 1031 MobiDBLite consensus disorder prediction 439 474 - -
Pvu9g2261 1031 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2261 Pvu-Chr9 32517397 32528454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2261 1 1030 SBP-box Gene Family AT3G60030 45.299 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu9g2261 SBP 6.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2261 - - gmx:100776125 1776.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2261 9 32517397 32528454 Pvu9g2261 9 32517397 32528454 ECH
Pvu3g1251 3 29957916 29964808 Pvu9g2261 9 32517397 32528454 PCT