Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2205 ATGGGTCGTCCAAAATTGATCTTGAAACCCATCACAAATGCGAGAGATCGTGATTTGGCTTTCATGAAGAGGAAGAAGGCACTGATGAAGACAATATCTGAATTTTGTAGTGTGTGTGGAGTGAAAGCTGGCTTGATTATATATGATGGCAAAGGTGATTCTCCACCATTGACTTGGCCCCAAGACCCCATTGAAATGCAATCCATCATCCAAAGGTACGAGAGTATGATGTCTGAGAAAATTCCTAAGAACTTTGATCTCAATAACTTTTTTGAGATTAGGAAGAACATGGTTGACAGTGAGATTTCCAAACTTCAGAAAGATATCCTTGAGACCAAATATCCAACTTGGCATCCATTATTCAGCACCCTTGGTGCTGAAGAATTGAAGAATTTCATTGCTAGTTTGGATATTAAGCTTGAAGCTTGCAATCAACGAACAAAAATGTTCGAATGCAAGAAACAAACTGAAGCACAATTCAATTTCAAGCAATGCCTGATTCAACCAGGAAGTGTTGCTCCAAACTCAAACCAACTGATTTCCATGCAGGATATCTTCCAAAACCAGCTTCTTTTTGCCCCAATGAAGCCACTAAATGCTGACCTTGCACCATTTCTCCAATACAATCTTGAAAAAGGTTCTAGTTCTCTATCCCAAAAGCTTAACTTTGATGCAAATCTTATGCAAATGAAGGCTGGGAACGAAGTGCTGGTGAATAAAACCAATGAAGTTGCTGTGCCACAAGAACATGCATGCCAAATTGATGTGTTTAGGAATCCTTCAAATCAATTTGATGTGTTTAAGAATCCTTCAAATCAATTTGATGTGCCTTGTGATCTTCTTGATGACTCTTTGAATTTTTTTAACCAACTTGGTGATATACAAAGTTTGAATCAACAATGGGGGAATAATCAACATGATGCACATGTGATTGGAGGAAGTTCCACAACAATGAATGGTGGTGTTACTACTTATGATACAAATTTTCATGGAAATCAGTACAATCCAGAGTTCTCTCTTTGCAATTACAATGGAGTTATGCAATCCTATAACAATAATGCATCATGGCAGAATATTGGTTTTCAATAA 1089 0.3747 MGRPKLILKPITNARDRDLAFMKRKKALMKTISEFCSVCGVKAGLIIYDGKGDSPPLTWPQDPIEMQSIIQRYESMMSEKIPKNFDLNNFFEIRKNMVDSEISKLQKDILETKYPTWHPLFSTLGAEELKNFIASLDIKLEACNQRTKMFECKKQTEAQFNFKQCLIQPGSVAPNSNQLISMQDIFQNQLLFAPMKPLNADLAPFLQYNLEKGSSSLSQKLNFDANLMQMKAGNEVLVNKTNEVAVPQEHACQIDVFRNPSNQFDVFKNPSNQFDVPCDLLDDSLNFFNQLGDIQSLNQQWGNNQHDAHVIGGSSTTMNGGVTTYDTNFHGNQYNPEFSLCNYNGVMQSYNNNASWQNIGFQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2205 362 PANTHER MADS BOX PROTEIN 5 263 - -
Pvu9g2205 362 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Pvu9g2205 362 PANTHER PROTEIN, PUTATIVE-RELATED 5 263 - -
Pvu9g2205 362 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Pvu9g2205 362 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu9g2205 362 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pvu9g2205 362 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2205 Pvu-Chr9 31659831 31660919 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2205 1 150 Type I MADS-box Gene Family AT5G55690 29.032 4.47e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu9g2205 SRF-TF 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2205 - - vra:106760100 554.673