LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g2201	ATGAGCTTTGGAAGTAGAGGGAAGCTGAAAGACACGAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAAGAGGGACAAGACACTGGCTCAATACAGTGCAGATGCTGAGATTCTGGCTGAGTTTGAGCAGTCTGGTGTGTCTGGCAAATCATTTGACTACTCCAGGATGGTCCTTGATCCTCCCAGGTTAGTGTCCGGGGAAAAAATGACTGCATATCTGTCCAAAATCCAAAGGGGTGGTCTTATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAAGCCACTTTTAGGATCATTGGGTACAGTGAGAATTGTTTTCAGTTGTTGGGTTTGGAGAGGCAAATTGACTCTAAGCAGTTCATAGATTTGATTGGGGTTAATGCAACAACCCTTTTCACTCCCCCTTCAGGGGCTTCCCTAGCAAAAGCTGTGGCTTCCAGGGAAATTTCTCTTCTGAACCCGATTTGGGTCTATGCGAGGACAACCCAGAAGCCATTTTATGCCATACTGCACAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCATGCACGGTTGAGTGATCCAGCATTGTCACTTGCTGGGGCGGTTCAATCACAGAAGCTGGCTGTGAGGGCTATTTCTAGGCTGCAATCTCTTCCTGGGGAAGATATTGGCTTGTTGTGTGACACAGTTGTTCAGGAAGTGCAGAAGCTTACTGGATATGACAGGGTTATGGTTTATAAGTTTCACGAGGATGATCATGGTGAGGTTGTAGCTGAGATTAGGAGGTCAGATATGGAGCCTTACTTGGGTTTACATTATCCTGCCACAGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAAAACCGGGTCAGGATGATTTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTAAGGCAACCTCTTTGCTTGGTGAATTCAACCCTTAGGTTACCACATGGTTGTCACACTCAGTACATGGCCAACATGGGATCAATTGCCTCTCTGGTGATGGCAATTATAGTCAATGGAAAGGATGCAACAAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACGCTATGTGTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAACTTTACATGGAGATTCAATTGGCATCACAAATGGCAGAAAAGAGAATTCTTAAAACTCAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTCGGCATTGTGACCCAGTCTCCAAGTATTATGGATCTTGTGAAGTGTGATGGGGCTGCCTTGTTTTATGATGGAAACTGCTGGTTGTTAGGCACATCCCCAACTGAAGCACAGGTAAAAGACATCGCAGAATGGCTACGTAGTAGTCATGGGGACTCAACAGGTTTGACAACGGATAGTTTAGCCGATGCTGGTTATCCAGGTGCTGCTTCACTGGGTGATGCGGTTTGTGGCATGGCCACGGCAAGAATCAATTCAGAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTATGGAAGTTAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAGGGATGATGGAGGAAAAATGAACCCAAGATCATCATTTAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAGATCAATGCTATTCACTCATTACAACTAATAATGAGAGATTCATTCCGAGACGTGGAGATCACCAGCCCAAAGACTTTAAACTATGTACAGAAAACTGGCACTGCAACTGGAGCAATGGATGAACTCAGTTCAGTAGCTCTTGAAATGGTGAGATTGATCGAGACAGCAACAGTTCCAATTTTTGGGGTTGATTCAGGTGGCGTAATCAATGGATGGAATTCAAAGATTGCTGAATTGACAGGTCTACAAGGCAGTGAAGCTATGGGAAAATCCGTGGTAAATGAAATTATACATGCGGACTCATGTGACACTTTTAAAAATACTCTAAGCAGAGCCTTGCAAGGCGAGGAGGACAAAAGTGTTGAGTTGAAAATAAAACACTTTGGGCTTCATCAACAAAAGCAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATTCTGTTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAGTAGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATCATACAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATCAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATTGGAAAATTGCTTCCTGGTGAAATTTTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTATACCGTGGAATAAGCGACCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTGTGGAGACTTATATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATATGCTTGGCTGTTTTTGCTTCTTGCAGGTTGTGACACCAGACCTGAATCAGTCCTCTGAAGAACACAAGCCAAGAGGCAGAGAAAACATTTCTGAATCTAAAGAGTTGGCTTATATACTACAAGAGATGAAGAAACCTTTAAATGGCATACGATTCACACACAAACTTTTCGAAAGTACAACTGTTTCAGAAAACCAAAAACAATTTCTTGACACCAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACCAATTTAGGAAGTATTAATGAAGGCACTTTGCAGCTAAACATGGAAGAATTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATGTTGATAAGAGAAAAGAACTTGCAACTCTTTCACGAAATTCCTGATGAAATAAAAGTGCTTTCTCTATATGGTGACCAAATTAGGCTTCAAGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAACCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGCAATGAGTTTATCCATCTGAAGTTCAGAATGACCCATTCTGGTCAAGGTATTCCTTCCAATGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGAATACACAGGAAGGTCTAGGACTATATATGTCCAGAAAAATCCTCAGTAGGATGAGTGGTCATGTCCACTACGTAAGAGAACAAAACAAGTGTTATTTTCTCATTGATCTTGAAATTAGAACAAGAAAAGAAAGGCAAAAGAATTTGCATGCAGAGAAAAGCATGTTAAGTTAG	3366	0.4183	MSFGSRGKLKDTSLSTSAESNMNSKRDKTLAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCMLAIEEATFRIIGYSENCFQLLGLERQIDSKQFIDLIGVNATTLFTPPSGASLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEHARLSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVQEVQKLTGYDRVMVYKFHEDDHGEVVAEIRRSDMEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKDATRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALFYDGNCWLLGTSPTEAQVKDIAEWLRSSHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSEHFLFWFRSHTAMEVKWGGAKHHPEDRDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIMRDSFRDVEITSPKTLNYVQKTGTATGAMDELSSVALEMVRLIETATVPIFGVDSGGVINGWNSKIAELTGLQGSEAMGKSVVNEIIHADSCDTFKNTLSRALQGEEDKSVELKIKHFGLHQQKQVVYLMVNACTSRDYTDSVVGVCFVGQDITYEKVVQDKFIKLEGDYKAIIQSLSPLIPPIFSSDQNACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISDQDSEKLPFGFFDRNGEFVETYITANKRIDAGGNMLGCFCFLQVVTPDLNQSSEEHKPRGRENISESKELAYILQEMKKPLNGIRFTHKLFESTTVSENQKQFLDTSDACERQIMAIIEDTNLGSINEGTLQLNMEEFVLGNILDAIVSQVMMLIREKNLQLFHEIPDEIKVLSLYGDQIRLQVVLSDFLLNVVNHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGQGIPSNVLHDMFEGGNQWNTQEGLGLYMSRKILSRMSGHVHYVREQNKCYFLIDLEIRTRKERQKNLHAEKSMLS*	1122

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g2201	1121	Pfam	PAS fold	73	185	IPR013654	GO:0006355
	Pvu9g2201	1121	Pfam	GAF domain	219	389	IPR003018	GO:0005515
	Pvu9g2201	1121	PRINTS	Phytochrome signature	134	156	IPR001294	GO:0006355\|GO:0009584
	Pvu9g2201	1121	PRINTS	Phytochrome signature	234	253	IPR001294	GO:0006355\|GO:0009584
	Pvu9g2201	1121	PRINTS	Phytochrome signature	319	340	IPR001294	GO:0006355\|GO:0009584
	Pvu9g2201	1121	PRINTS	Phytochrome signature	419	439	IPR001294	GO:0006355\|GO:0009584
	Pvu9g2201	1121	PRINTS	Phytochrome signature	504	523	IPR001294	GO:0006355\|GO:0009584
	Pvu9g2201	1121	PRINTS	Phytochrome signature	537	555	IPR001294	GO:0006355\|GO:0009584
	Pvu9g2201	1121	PRINTS	Phytochrome signature	607	623	IPR001294	GO:0006355\|GO:0009584
	Pvu9g2201	1121	PRINTS	Phytochrome signature	626	641	IPR001294	GO:0006355\|GO:0009584

Showing 1 to 10 of 48 entries

Previous1 2 3 4 5Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g2201	Pvu-Chr9	31593614	31599882	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g2201	15	1105	Histidine Kinase Gene Family	AT4G18130	62.919	0.0	1462

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g2201	K12123		-	gmx:100808192	2079.29

Showing 1 to 1 of 1 entries