Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2189 ATGTGGAGGAAAAAGATTCAGGTAGGAGAAACGAGTGAAGATAGAGGAGATCATAAGAAAGCAGAAGATGAAGGTCCCAGATCATATGACAGCGATTCCTTGGTGCTTATATCAATGGCTCACGTGTTGAAGGATGAAGGGAACAAGATGTTCCAGAAGCGGAATGCTGAGGGGGCTTTGGCAAAATATGAGAAGGCCCTGAAATTGCTTCCAAGAAATCATGTAGATATTTCTTATTTAAGGAGTAACATGGCTGCGTGCTATATGCAGATGGGTCTCCGTGAGTATCCTAGAGCAATCAATGAATGCAATTTGGCTCTTGAAGTAACACCAAAATATAGTAAAGCTCTGATGAAGAGAGCAAGGTGCTATGAAGCTTTAAATAGGCTGGATTTTGCGCTGAGAGATGTTAGTACTGTTTTGAAGATAGAGCCAAATAATGTAATGGCATTGGAGGTCTCAGATAAGGTGAAGCATGCTCTTGGAGATCGGGGATTAGTCGTAAATGATACAGAAATTGAGTTGCCTCCAGACTATGCCGGACCTCCTATTTTACCTCTGAAAAAATTAATGAAAGAAAAGAGTCACAAGAAGAAGAAAAACAAAGAGAAGGTGAAGTCTCTTGATAAAATTGAAGAAAAGCAAGCTGAGGAGAAATTAGGAGAGAATAAAGCTGAAGAGAAGGCCGAGGACAGTCGGAAAGAGAAGAAGGCTAACAAATCTAAAAAGAAGAAGGCCAAGGGAAAAAATGTTGAGAAAAAGGATGATGTTAAGGAAGTTATTGAGGAAAAAAGTACTGGTAGAAGTGAAGATATACCAAAGAAAGCAGCAAAACTTGTTTTTGGTGAGGATATAAGATGGGCTGAATTGCCAGTTAATTGCAGCCTCTTTCAGCTAAGGGAAGTTATTTGTGATCGTTTCCCTAGACTAGGAGCAGTTCTTGTCAAATATAAGGACCAAGAGGGTGATCTGGTCACTATCACTTCTGACGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTATCCGGCTGTACATAGTGGAAGTTAATCCTGAACATGATCCATTCTTTAAGAAGCTTAATGCAAAGAATGTAGAAAAGGTTAGTATTGCTAATTCTCCTGTGAATGGATCTGTGGTGAAAGGAAAGGACATTATTAGTTTATCTTGCATTGAGGATTGGATAATTCGGTTTGCACAACTGTTCAAGAACCATGTTGGGTTGGAACCTGACAGATATTTATATTTTCATAAATATGGTATGAAGCTCTATTCAGAGGCTGTGGAAGAGACAATTATAAGTGAGGAAGCTCAAGGCATATTTGATATTGCTGGAGGTAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCCAGGGCAAGGTACAGAGTTTATTTTACAGGAGATTCTTCTAAGGAGCATTTGCATGAACAAATCAGAAGTTTGTATGAATGGGCGTACGAAGAATATGAAAAATCTGGGGAGAAGTATGAAACAGCCATTGAAATTAAACCAGATTTTTATGAAGGCTTCTTGGCACTAGGCCAACAGCTGTTTGAGCAAGCCAAACTTTCTTGGAATTATGCACTCTGTTCTAAGGTAGATTTATCGACATGGCCCTCCTCTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAGCGTAGAGAAAGGAATGCTTATATGGGAAGAATCAGGAGAGCAGCAATTGCAGGAAACTTCCAATCCGAAGGATATTTTATTACATTTGCAGGACATGGGGTTGGACCAACTATTCAAAAATATTTCAGCAGATGAAATTGCTACACAGGTGGAAAATACGAGGTCTCAAATGAATCTTCTGTGGGGTACCATACTATATGAGCGCTCAATAGTGGAATTCAAGATAGGGTTACCGGGATGGAATGAAAGTCTTGAAGTTGCAGCTGAGAAGTTTCAACTTGCTGGAGCTTCTGCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATTACGGTCTTGGATTCGAAATTGATGAAATAGTCCAACCATGGAATGAGATGTACAACGCTAAAAAGTTGCAGAAAGGTGTTCTATCGTTCCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCTAAAATATACCATGCCTTTGAGCTTGTATGA 2175 0.3982 MWRKKIQVGETSEDRGDHKKAEDEGPRSYDSDSLVLISMAHVLKDEGNKMFQKRNAEGALAKYEKALKLLPRNHVDISYLRSNMAACYMQMGLREYPRAINECNLALEVTPKYSKALMKRARCYEALNRLDFALRDVSTVLKIEPNNVMALEVSDKVKHALGDRGLVVNDTEIELPPDYAGPPILPLKKLMKEKSHKKKKNKEKVKSLDKIEEKQAEEKLGENKAEEKAEDSRKEKKANKSKKKKAKGKNVEKKDDVKEVIEEKSTGRSEDIPKKAAKLVFGEDIRWAELPVNCSLFQLREVICDRFPRLGAVLVKYKDQEGDLVTITSDEELRWAETGSQGSIRLYIVEVNPEHDPFFKKLNAKNVEKVSIANSPVNGSVVKGKDIISLSCIEDWIIRFAQLFKNHVGLEPDRYLYFHKYGMKLYSEAVEETIISEEAQGIFDIAGGKFQEMAALALFNWGNVHMSRARYRVYFTGDSSKEHLHEQIRSLYEWAYEEYEKSGEKYETAIEIKPDFYEGFLALGQQLFEQAKLSWNYALCSKVDLSTWPSSEVLQLYNSAEDSVEKGMLIWEESGEQQLQETSNPKDILLHLQDMGLDQLFKNISADEIATQVENTRSQMNLLWGTILYERSIVEFKIGLPGWNESLEVAAEKFQLAGASATDIAVMLKNHCSNYGLGFEIDEIVQPWNEMYNAKKLQKGVLSFRLEPLFRRRISKIYHAFELV* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2189 724 SUPERFAMILY CAD & PB1 domains 277 361 - -
Pvu9g2189 724 Gene3D - 272 350 - -
Pvu9g2189 724 SMART PB1_new 274 351 IPR000270 GO:0005515
Pvu9g2189 724 SMART tpr_5 40 73 IPR019734 GO:0005515
Pvu9g2189 724 SMART tpr_5 78 113 IPR019734 GO:0005515
Pvu9g2189 724 SMART tpr_5 114 147 IPR019734 GO:0005515
Pvu9g2189 724 PANTHER PROTEIN CLMP1 2 723 IPR044517 -
Pvu9g2189 724 SUPERFAMILY TPR-like 40 532 IPR011990 GO:0005515
Pvu9g2189 724 CDD PB1 282 348 - -
Pvu9g2189 724 Pfam PB1 domain 278 349 IPR000270 GO:0005515
Pvu9g2189 724 MobiDBLite consensus disorder prediction 191 210 - -
Pvu9g2189 724 Gene3D Tetratricopeptide repeat domain 38 163 IPR011990 GO:0005515
Pvu9g2189 724 Coils Coil 222 263 - -
Pvu9g2189 724 MobiDBLite consensus disorder prediction 216 255 - -
Pvu9g2189 724 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Pvu9g2189 724 PANTHER PROTEIN PHOX3 2 723 - -
Pvu9g2189 724 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Pvu9g2189 724 Coils Coil 197 217 - -
Pvu9g2189 724 MobiDBLite consensus disorder prediction 216 237 - -
Pvu9g2189 724 ProSiteProfiles PB1 domain profile. 274 351 IPR000270 GO:0005515
Pvu9g2189 724 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2189 Pvu-Chr9 31430120 31439096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2189 28 147 Calmodulin-binding Proteins AT3G25230 32.836 6.07e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2189 - - gmx:100820306 1120.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2189 9 31430120 31439096 Pvu9g2189 9 31430120 31439096 ECH
Pvu3g1784 3 38344366 38348394 Pvu9g2189 9 31430120 31439096 PCT