Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2181 ATGTTATCTCAGCCAACTCTTTTCTCACCGATTCACCAACCTCAACGTAACAACGTTCTCGTCTCAATGGACCGTATTAGGCGCCTTCTTGAAGTAGTGCCTTCCAGAACCGGGCAGCATCAGAATCAGCCACCGATTGGCTCTGGGATCCAAATAAGCAACTCCACTGGAGAAAGTGCAGTGGTGACAGGGGCTCAAGTGGAAGGAATGGAGCACCAGAGAGTTGAGGAAAAAATAGATGAAAGTGGGAAAAGGCGCATGATGAAAGGAGTGAAACTAATAGCTAAAGCATTGGAGGATGTGGAAAGGTGTACCCGTAAGAAAGGGGGAGGCAGAGTAAGTTTTTATGATTGCAACTTATGTATGTCCGTAGCAAAAGATCCTGTGTTGACCTGCTGTGGTCACATGTTTTGCTGGCCATGCTTTTATCACTTGCCATATGCCTATGGAAATGCGAAGGAGTGCCCTGTTTGTGAAGGAGAGGTCATTGAAACTAACATCACTCCAATTTATGGTAATTCCAGTGGCACTTTCGATTCTGATGTAGCTTCTTCGATGGTTCCTCCTCGACCTGCTGCATCCAGAATCAACAGTTTTAGGTATTACTTTTAG 612 0.4542 MLSQPTLFSPIHQPQRNNVLVSMDRIRRLLEVVPSRTGQHQNQPPIGSGIQISNSTGESAVVTGAQVEGMEHQRVEEKIDESGKRRMMKGVKLIAKALEDVERCTRKKGGGRVSFYDCNLCMSVAKDPVLTCCGHMFCWPCFYHLPYAYGNAKECPVCEGEVIETNITPIYGNSSGTFDSDVASSMVPPRPAASRINSFRYYF* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2181 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 194 IPR013083 -
Pvu9g2181 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 201 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pvu9g2181 203 Pfam Zinc finger, C3HC4 type (RING finger) 117 163 - -
Pvu9g2181 203 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 14 201 - -
Pvu9g2181 203 SUPERFAMILY RING/U-box 113 168 - -
Pvu9g2181 203 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Pvu9g2181 203 SMART ring_2 118 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2181 Pvu-Chr9 31314531 31319302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2181 52 200 C3H Transcription Factor Family AT3G58030 43.421 9.41e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2181 K10666 - gmx:100793230 195.282