Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu9g2161 | ATGGCTTTTCACGACCATCTGGCACATGAAATCACGTTTCAGTCGTTCACGGAGGAGCAGCAGATGGGTCAGGGCAGAGACATGCAGCGCCTGCTGCCGCTCTCCGGCGGAGCACCCACGTGGCTGAACGGCAGCAACGCGGCGACGCTTCGGCAGCAGAATTTCCTCCACCTGCAGCCGGAGTCGGGTACGGCGCAGCAAAACGACGACGTTCGGGGGGGCATAGATCGGAACCGGACGGAGAGCAACTCGGAACCGGACGATTTGGCGGAATACAAAGCGGACATTCTGGGACACCCGCTTTACGATCAACTCCTATCAGCTCACATCTCGTGCCTGAGGATCGCCACGCCCGTTGACCAGCTTCCACGGATCGACGCGCAGCTTCAGCAGTCTCAGCGAGTCGTTGATAAGTACTCTAGCCTCGGAAACGGCGTCGTCGATGACAAAGAGCTCGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAATCTCTACAAACCTTGACTGGTGTATCCCCCGGAGAAGGAACTGGTGCAACAATGTCCGACGATGAAGAAGACCAGGCTGAGAGTAATGCCAACATATATGAAGGAAGCATGGACGGCGCTGATAGTCTCAGCTTTGGACCTCTAGTTCCCACCGAAACTGAAAGATCTTTGATGGAGCGTGTTAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATCGTGGACATAAGAGAAGAAATTCTCCGAAAGAGAAGAGCCGGGAAGCTCCCAGGTGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCCAAATGGCCATATCCAACGGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAACTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA | 1092 | 0.5137 | MAFHDHLAHEITFQSFTEEQQMGQGRDMQRLLPLSGGAPTWLNGSNAATLRQQNFLHLQPESGTAQQNDDVRGGIDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHISCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTGVSPGEGTGATMSDDEEDQAESNANIYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM* | 364 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu9g2161 | 363 | CDD | homeodomain | 277 | 338 | IPR001356 | GO:0003677 | |
Pvu9g2161 | 363 | SMART | HOX_1 | 276 | 341 | IPR001356 | GO:0003677 | |
Pvu9g2161 | 363 | Pfam | KNOX2 domain | 146 | 196 | IPR005541 | GO:0003677|GO:0005634 | |
Pvu9g2161 | 363 | Pfam | Homeobox KN domain | 294 | 333 | IPR008422 | GO:0003677|GO:0006355 | |
Pvu9g2161 | 363 | MobiDBLite | consensus disorder prediction | 331 | 363 | - | - | |
Pvu9g2161 | 363 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 22 | 356 | - | - | |
Pvu9g2161 | 363 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 22 | 356 | - | - | |
Pvu9g2161 | 363 | SUPERFAMILY | Homeodomain-like | 276 | 340 | IPR009057 | - | |
Pvu9g2161 | 363 | MobiDBLite | consensus disorder prediction | 59 | 87 | - | - | |
Pvu9g2161 | 363 | ProSiteProfiles | ELK domain profile. | 254 | 274 | IPR005539 | GO:0003677 | |
Pvu9g2161 | 363 | Pfam | KNOX1 domain | 92 | 133 | IPR005540 | GO:0003677|GO:0005634 | |
Pvu9g2161 | 363 | MobiDBLite | consensus disorder prediction | 72 | 87 | - | - | |
Pvu9g2161 | 363 | SMART | KNOX2_2 | 142 | 197 | IPR005541 | GO:0003677|GO:0005634 | |
Pvu9g2161 | 363 | SMART | KNOX1_2 | 90 | 134 | IPR005540 | GO:0003677|GO:0005634 | |
Pvu9g2161 | 363 | SMART | ELK_2 | 254 | 275 | IPR005539 | GO:0003677 | |
Pvu9g2161 | 363 | Pfam | ELK domain | 254 | 275 | IPR005539 | GO:0003677 | |
Pvu9g2161 | 363 | Gene3D | - | 280 | 357 | - | - | |
Pvu9g2161 | 363 | ProSiteProfiles | 'Homeobox' domain profile. | 274 | 337 | IPR001356 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu9g2161 | Pvu-Chr9 | 30970361 | 30976280 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu9g2161 | 90 | 358 | Homeobox Transcription Factor Family | AT5G11060 | 81.685 | 1.15e-164 | 464 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-KNOX | Pvu9g2161 | KNOX2 | 2.6e-19 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu9g2161 | - | - | gmx:100816347 | 686.026 |