Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2116 ATGGAAGCTAGTACTGGACTTTTTGCAGGTACTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACCCGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGACTTACCGTGGAAGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCAGTGTGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGATGTGGATGATATTGAACATGAATTCAAGAATGAACAGGTGCAGAAAGGACACATGATCCATGGAGATGATAATGGGAATTCTAAATCAGGTTTAGCAAAGGTGAATGGGGAGCTGCTTTCTACTAGTGTGGGAGAACCAGGTGCAAAGTTGGATGACAAGGAGAATATAGATGAGTGGATGTTGCGCCAAGGGAATCTATGGCCTGAAACTGATTCCTCAGTTGATCATGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCAGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTAGATTCCTCCTTCTCTTACTCTTCATTCAGTACAGAATCTTCCACCCTGTACCTGATGCGGTTGGACTATGGTTCATATCTGTAACGTGTGAAATCTGGCTTGCATTATCCTGGTTGATTGATCAGATTCCCAAATGGTTTCCCATTGATCGCGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACAAGAGAACAAGCCAAATATGCTTTCTCCCATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTTGTGACAGCTAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGACGGAGCTTCCATGCTTACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTACCTTTCTGCAAGAAGTTCTCTATAGAACCTAGAGCACCAGAAAAGTACTTCTCTGAGAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACTTACGTAAAAGAACGCCGTACTATGAAGAGAGAATACGAAGAATTTAAGGTGAGAATAAATGCACTAGTGGCTAAATCTATGCGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACTCCAAAGATCATCCAAGTATGATACAGGTCCTTCTTCCTCACAATGTAGGTAATGAACTTCCTTGTCTTGTCTACACATCTCGTGAGAAAAGGCCTGCCTTTCAGCACCACGGCAAAGCTGGCGCAATCAACGCCCTGCTTCGAGTATCAGCAGTGCTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCACTATGTAAATAACAGCAAAGTTGTGCGAGAAGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTCAGATTTGACAGCCTAGATAGGAATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTACGGTGCCTAGATGGAATTCAGGGACCTGTTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAATGCTTAACTGGCTGTGACTCACCAATGTCTTCAAAACGCCCAAGTATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAGCAACAGATGAGGAAAAGGAGCTATTGAAGTCACAGACGGATGATGAAAATAAATTTAGGAAGTCCACACTTTCCATGAACTCTTCATTAACAGAACAAGGTGGTGTTGATCCTTCTTCCAGTCAGGAAGTCCTGCTTAAAGAAGCTATTCATGTCATGAGTTCTAAATATGAAGACAGAACTCTCTGGGGATATGAGGAGGGTTTAAGCTATGGATCTATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTCTCATGGTTGGAGGTCTGTATATTGCATGCCAAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCCTATTCAGCCGCCATTGCCCTCTTCTGTATGGCTTCAATGGTGGAAAACTCAAGGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCGACCCCTTCAGCTCAATACCCCTCCTAATATATTGTATCATTCCTGCTATATGCTTGCTCACTGATAAATTCATCACACCATCGGTTGGCACTTTTGCTAGTCTAATTTTCATCTCATTGTTCATCTCAATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTGGAGTCAGCCTTGAGGAGTGGTGGAGAAGCCAGCAATTCTGGGTGATTGGCAGTGTGTCTGCAAACCTCTTTGCCGTTGTGCAAGGCATTATGGGAGCCCTGCCACTGGGTAGAGTCAACACAAACTTCAGCATTGTATCAAAGGCACCAGATGATGGAGAGTTTCGTGAACTCTATACCATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATTGTGGCTGGCTTCACAGATTCCATAAACAGTGGTGGAAGTTCTTGGGGAGCACTGCTTGGGAAACTCTTCTTTTCTTTATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACCAAAGGACCTGATGCCAAACAATGTGGAATCAGTTGCTGA 2925 0.4345 MEASTGLFAGTPNSKELVAIQGPDEPKPVKNLDGQLCEICGDSVGLTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKNEQVQKGHMIHGDDNGNSKSGLAKVNGELLSTSVGEPGAKLDDKENIDEWMLRQGNLWPETDSSVDHEKAMKEPLSRKVAIPSGKLSPYRMMVVARFLLLLLFIQYRIFHPVPDAVGLWFISVTCEIWLALSWLIDQIPKWFPIDRETYLDRLSIRFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNSKDHPSMIQVLLPHNVGNELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPVYVGSACIFRRKCLTGCDSPMSSKRPSMVQVHSKQDENGEEASITAATDEEKELLKSQTDDENKFRKSTLSMNSSLTEQGGVDPSSSQEVLLKEAIHVMSSKYEDRTLWGYEEGLSYGSIAADTLTSLKMHSHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSRHCPLLYGFNGGKLKGLQRIAYINSTVDPFSSIPLLIYCIIPAICLLTDKFITPSVGTFASLIFISLFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVVQGIMGALPLGRVNTNFSIVSKAPDDGEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGGSSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDAKQCGISC* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2116 974 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Pvu9g2116 974 Coils Coil 379 399 - -
Pvu9g2116 974 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Pvu9g2116 974 Pfam Cellulose synthase 588 968 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pvu9g2116 974 Pfam Cellulose synthase 281 579 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pvu9g2116 974 SUPERFAMILY Nucleotide-diphospho-sugar transferases 281 777 IPR029044 -
Pvu9g2116 974 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Pvu9g2116 974 PANTHER CELLULOSE SYNTHASE 1 974 - -
Pvu9g2116 974 SUPERFAMILY RING/U-box 22 107 - -
Pvu9g2116 974 MobiDBLite consensus disorder prediction 581 615 - -
Pvu9g2116 974 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 974 - -
Pvu9g2116 974 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 269 377 IPR029044 -
Pvu9g2116 974 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 423 568 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2116 Pvu-Chr9 30325929 30331572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2116 1 974 Cell Wall Biosynthesis AT5G17420 62.852 0.0 1321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2116 K10999 - gmx:100777270 1771.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2116 9 30325929 30331572 Pvu3g1602 3 35952680 35958487 PCT