Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2115 ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCACATAACCGCAATGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTATGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGACTTATTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGGCCTTGCTATGAGTATGAAAGGAGAGAAGGGGGCCAGCTTTGCCCACAGTGCAAAACCAGATATAAGCGTCTCAAAGGGAGCCCGCGGGTGGAGGGAGATGATGAGGAGGAGGATGTGGATGACATTGAGCATGAGTTCAATATTGATGACGAAAAGGACAAGCATGGCCATGCTGCAGAGGCCATGCTTCATGGAAAAATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAATACCAGTCATTTCTGGGGGCCGTTCTAGGCCTGTTAGTGGGGAGTTCCCAATATCATCTAATGGTTATGGGGAGCAGATGTTGTCTTCTTCACTGCATAAACGAGTGCATCCATATCCAATGTCTGAACCTGGGAGTGCCAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGAAAGGATGGAGGACTGGAAGTTGCAGCAAGGCAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTAGAGGAAGCAAGGCAACCACTTTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATATAGAATGGTGATTGTGGCCCGTCTTGTCATTCTTGCTTTCTTCCTCAGATACAGACTTATGAATCCTGTACGTGATGCAATGGGGCTGTGGCTTACCTCTATCATATGTGAAATATGGTTTGCTTTTTCATGGATTCTGGATCAGTTCCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGACCGTCTTTCCATGAGGTACGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACCGTGGATCCAATGAAGGAACCTCCTCTGGTTACGGGAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTGGATAAGATATCATGCTATATTTCTGATGATGGAGCCTCAATGTGTTCATTTGAGTCCCTGTCAGAAACTGCAGAGTTTGCTAAGAAGTGGGTACCGTTTTGTAAGAAATTTTCTATAGAACCTCGGGCACCTGAGATGTACTTCAGTGAGAAGATAGACTACTTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTCGAGCCATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAAGCCCAGAAAGTTCCTCAGGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAACACTAAGGATCACCCTGGCATGATTCAAGTGTTTCTTGGAAGCAATGGGGGTCTTGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCCAGAGAGAAAAGACCTGGTTTTCAACACCACAAGAAAGCTGGTGCTATGAATGCTCTGGTTCGGGTATCTGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCTGCCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAGATCGGGAAGAAGGTTTGCTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATACACATGATCGTTATGCCAACAGAAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAAGGACCTGCATATGTGGGGACTGGGTGTGTTTTCAGGAGGCAAGCTTTGTATGGCTATAATCCTCCAAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGATTGCTGCCCATGTTTTGGAAGCCGCAAGAAGTACAAGGAGAAGAAGAGTGATGCAAATGGAGAGGCTGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGGTGCTGATGTCCCATATGAATTTTGAGAAGAAATTTGGACAGTCCTCTATCTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCGAGTCCAGCTGCACTGCTTAAAGAAGCCATTCATGTGATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATTACAGAAGATATTCTAACAGGCTTTAAGATGCATTGCCGCGGGTGGAGGTCTATTTACTGTATGCCAAAGAGAGCTGCATTCAAGGGAACTGCTCCAATCAACTTGTCAGATCGTCTCAATCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTATGGTATGGCCTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACAACTGTGTATCCATTCACCTCCATTCCTCTTGTTGCCTATTGTATTCTTCCCGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTTTGCGGGTTTGTACTTTATTGCTCTCTTCTCTTCAATCATTGCAACTGGTGTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAAGAATGGTGGAGAAATGAGCAGTTTTGGGTGATTGGTGGGGTATCAGCTCATCTTTTTGCTGTGATACAAGGTCTGCTAAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAACAGATGATGAGGAGTTTGGAGAACTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTGGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCCTGGGGCCCACTATTTGGAAAGCTCTTCTTTTCTTTCTGGGTCATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTGATTTGGTCAGTTCTATTGGCTTCTATTTTCTCCTTGCTGTGGGTAAGAATTGATCCATTTGTCCTCAAGACTAAGGGACCTGATACCAAACTATGTGGAATCAACTGCTGA 3126 0.452 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGGQLCPQCKTRYKRLKGSPRVEGDDEEEDVDDIEHEFNIDDEKDKHGHAAEAMLHGKMSYGRGPEDDENSQFPIPVISGGRSRPVSGEFPISSNGYGEQMLSSSLHKRVHPYPMSEPGSARWDEKKEDGWKERMEDWKLQQGNLGPEPDEDPDAAMLEEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVRDAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSMRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTGNTVLSILAMDYPVDKISCYISDDGASMCSFESLSETAEFAKKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSNGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQIGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKYKEKKSDANGEAAASLKGMDDDKEVLMSHMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGLKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFIALFSSIIATGVLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2115 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Pvu9g2115 1041 Pfam Cellulose synthase 332 1035 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pvu9g2115 1041 SUPERFAMILY RING/U-box 21 107 - -
Pvu9g2115 1041 SUPERFAMILY Nucleotide-diphospho-sugar transferases 346 845 IPR029044 -
Pvu9g2115 1041 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Pvu9g2115 1041 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Pvu9g2115 1041 Coils Coil 430 450 - -
Pvu9g2115 1041 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1041 - -
Pvu9g2115 1041 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1041 - -
Pvu9g2115 1041 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 478 623 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2115 Pvu-Chr9 30314266 30319989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2115 1 1041 Cell Wall Biosynthesis AT5G17420 85.701 0.0 1838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2115 K10999 - gmx:100815436 2072.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2115 9 30314266 30319989 Pvu9g2115 9 30314266 30319989 ECH
Pvu3g1602 3 35952680 35958487 Pvu9g2115 9 30314266 30319989 PCT