Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2098 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTAACGTTCTCCAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTCGCCCTCATAGTCTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGCGATCCATGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCAGAGAGGCAGCTTGTTGTAAGTGATCAACCACAAAGTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTTCTACAGAAAAATCAAAGGAATTTTATGGGACAAGATTTGGATGGTCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTAATAAAAAGGATAAGGCCCTACAAGAACAAAACAACACTCTCGCAAAGAAGATAAAGGAAAAAGAGAAGGCACTAGCAGCACAACAAGCACAATTTGAGCGACAAGCTGATGAAATGGATCTAGCCTCCTCAGTCCTTGTACCTCAACCATTGGAGACATCTAATATTAGAGGGTCCTCACAAGTAATAGGTGATGGAGGAGATAATGAAGGAAGTGCAACAACTCCAAGTCGAGTAAATGCCATTCTTCCACCTTGGATGCTTCGTCCTACAAATGAATAG 744 0.418 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVVSDQPQSENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKDKALQEQNNTLAKKIKEKEKALAAQQAQFERQADEMDLASSVLVPQPLETSNIRGSSQVIGDGGDNEGSATTPSRVNAILPPWMLRPTNE* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2098 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu9g2098 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu9g2098 247 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pvu9g2098 247 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pvu9g2098 247 Coils Coil 88 108 - -
Pvu9g2098 247 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu9g2098 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 229 - -
Pvu9g2098 247 MobiDBLite consensus disorder prediction 210 233 - -
Pvu9g2098 247 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pvu9g2098 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu9g2098 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu9g2098 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu9g2098 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu9g2098 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu9g2098 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu9g2098 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Pvu9g2098 247 Coils Coil 125 145 - -
Pvu9g2098 247 Coils Coil 151 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2098 Pvu-Chr9 30080599 30089684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2098 1 236 MADS-box Gene Family AT1G26310 56.198 1.40e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu9g2098 K-box 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2098 K09264 - gmx:100816836 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1889 3 39436737 39441349 Pvu9g2098 9 30080599 30089684 ECH
Pvu8g0285 8 2315794 2321854 Pvu9g2098 9 30080599 30089684 ECH
Pvu9g2098 9 30080599 30089684 Pvu9g2098 9 30080599 30089684 ECH
Pvu3g1888 3 39425975 39431373 Pvu9g2098 9 30080599 30089684 PCT