Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2076 ATGGCCGAAGCAGAAGACAACGATACCAGTTCGCCCGAGCGCGAAGTAGAAACCAAAATTAACAAGAAGAAGCTTCGCAAGAGAAAAAGACCAAACAAGGGGGAACAAAAACAAGAGGAGAAGAACGATGTGAAGATTGATAACACGCTAACACAGGCCGAAGATGAAGAGACACAGGTGAACACTAACGATTCATCCGGAATCATGAGTTCCGATTCTTTCTCCTCTCTTACCTTGTCCGAACCTACTTCCCAAGCCATTGCGGACATGGGCTTCCACCTTATGACTCAGATTCAAGCGAGGGCGATTCCGCCGCTGCTGATCGGAAAGGACGTGCTGGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGCTGGAGTTGCTGTACAACTCTCAGTTCACGCCGCTCAACGGAACGGGTGTTGTTGTGATATGTCCGACGAGGGAGCTCGCGATTCAGACGCACGCCGTGGCGCAGGAACTGCTGAAGTACCATTCGCTAACGCTCGGGTTGGTGATTGGGGGTTCCGGGCGAAAGGGAGAGGCTGAGCGCATTGTGAAAGGGGTGAACCTATTGGTGGCGACGCCGGGTAGGCTTCTCGATCATCTTCAAAACACGAAAGGGTTCATATATAAAAACTTGGAGTGCCTCGTGATTGATGAAGCCGACAGGATATTGGAAGCAAACTTTGAGGAGGATATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACCGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTATCTTTTCAGACAACTCCTATCTATATCGATGTAGATGATGGGAGAAAAAAGGTGACAAATGAAGGATTACAACAGGGTTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGATCTTCTCAAGTGCACTGGGTTAGACTGCTTAAATATTCATGGAAAACAAAAACAACATGCCCGTACTACTACGTTCTTCAACTACTGCAAAGCTGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAACGCTTTACTTTTTCTGATTCCTGAAGAATTGAAATTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTGAAAGAGTATGCATTTGATCATAAGAAGCTGGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATCTATCATTTGAACAATATGGCTAAAGACGCATATCGGTCATATATATTAGCATATAATGCACATTCTATGAGAGATATATTCAATGTTCACCGCCTAGATTTACTGGCTGTTGCTACTTCATTTTGTTTTTCCAATCCACCGAAGGTGAATCTAAACATAGATAGCAGTGCTTCGAAGCATAGGAAGAAAGTACGCAAAGTGGAAGGAAAGAGATGA 1611 0.4488 MAEAEDNDTSSPEREVETKINKKKLRKRKRPNKGEQKQEEKNDVKIDNTLTQAEDEETQVNTNDSSGIMSSDSFSSLTLSEPTSQAIADMGFHLMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLVPALELLYNSQFTPLNGTGVVVICPTRELAIQTHAVAQELLKYHSLTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLECLVIDEADRILEANFEEDMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNYCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELKFLHYLKAAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNAHSMRDIFNVHRLDLLAVATSFCFSNPPKVNLNIDSSASKHRKKVRKVEGKR* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2076 536 SMART DUF4217_3 453 516 IPR025313 -
Pvu9g2076 536 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 17 518 - -
Pvu9g2076 536 Pfam DEAD/DEAH box helicase 96 267 IPR011545 GO:0003676|GO:0005524
Pvu9g2076 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 278 IPR014001 -
Pvu9g2076 536 CDD DEADc_DDX18 83 280 IPR044773 GO:0003724|GO:0005524
Pvu9g2076 536 SMART ultradead3 91 296 IPR014001 -
Pvu9g2076 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 308 462 IPR001650 -
Pvu9g2076 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 72 100 IPR014014 GO:0003724
Pvu9g2076 536 Pfam Helicase conserved C-terminal domain 308 412 IPR001650 -
Pvu9g2076 536 MobiDBLite consensus disorder prediction 53 76 - -
Pvu9g2076 536 SMART helicmild6 332 413 IPR001650 -
Pvu9g2076 536 CDD SF2_C_DEAD 293 423 - -
Pvu9g2076 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 434 IPR027417 -
Pvu9g2076 536 PANTHER RNA HELICASE 17 518 - -
Pvu9g2076 536 Gene3D - 289 532 IPR027417 -
Pvu9g2076 536 MobiDBLite consensus disorder prediction 1 76 - -
Pvu9g2076 536 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 224 232 IPR000629 -
Pvu9g2076 536 Gene3D - 15 282 IPR027417 -
Pvu9g2076 536 MobiDBLite consensus disorder prediction 32 52 - -
Pvu9g2076 536 Pfam Domain of unknown function (DUF4217) 454 514 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2076 Pvu-Chr9 29793668 29799706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2076 32 431 Eukaryotic Initiation Factors Gene Family AT1G72730 29.950 4.67e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2076 K13179 - gmx:100798290 951.814