Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2033 ATGGTGCAAACAAGGAAGTTCAGAGGTGTTAGGCAGCGCCATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCACTTCTCAAAAGGAGGGTGTGGCTAGGGACGTTCGAAACAGCAGAAGAAGCGGCACGAGCATACGATCAAGCTGCGATACTCATGAGTGGCCGAAACGCCAAAACCAACTTCCCAATAGCACAAACTCCGGAGGGCGATCCAAAGACGCTAACACCAACGCAGCAGAACAATATTCCGACAACCTCAAAGGAACTGGAAGAGATTCTCCATGCAAAGCTCCGAAAGTGTGGGAAGCTTCCGTCTCCTTCCATGACTTGCTTGAGGCTGGACCCCGAGAACGCCCACATTGGCGTCTGGCAGAAGCGCGCCGGCCAGCATTCCGACTCCAACTGGGTGATGATGGTGCCCTTCGGAAACAAGGCCGATGAAGGTGCAAATCACTCCACCGCTAATACTTCATCTGCTTCGTCGTTTTCTGAGTCTGGTGAGAGCCAACAGGGTAGAAGGCAAGAGCATGTGCGAACAGAAATGGAGGAGGAAGAGCGAATCGCTATGCAAATGATCGAAGAACTCCTCAGCAGAAACTGGCCCACTACCCCTTCATGTAATAACATGTTCTGA 636 0.5204 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIAQTPEGDPKTLTPTQQNNIPTTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENAHIGVWQKRAGQHSDSNWVMMVPFGNKADEGANHSTANTSSASSFSESGESQQGRRQEHVRTEMEEEERIAMQMIEELLSRNWPTTPSCNNMF* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2033 211 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pvu9g2033 211 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pvu9g2033 211 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pvu9g2033 211 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 204 - -
Pvu9g2033 211 MobiDBLite consensus disorder prediction 149 169 - -
Pvu9g2033 211 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Pvu9g2033 211 MobiDBLite consensus disorder prediction 147 182 - -
Pvu9g2033 211 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 204 - -
Pvu9g2033 211 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pvu9g2033 211 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pvu9g2033 211 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Pvu9g2033 211 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2033 Pvu-Chr9 29159605 29160767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2033 1 200 AP2-EREBP Transcription Factor Family AT1G15360 58.049 3.79e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu9g2033 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2033 - - gmx:100779921 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2033 9 29159605 29160767 Pvu9g0960 9 14411949 14413203 ECH
Pvu9g2033 9 29159605 29160767 Pvu9g2033 9 29159605 29160767 ECH
Pvu3g1709 3 37339186 37340346 Pvu9g2033 9 29159605 29160767 PCT