LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g2024	ATGGCGCAATCCGGGTCTGGATTCTTGTGCTTCGCCACTCTCTTGTTATGCAGCGCTTTCGCAACCTCCTTCTCCACGGACCCTCCCTTGCTCCAGCAGCACAAGGACCGTGTCGGAAGGCTCCCTGGTCAGAACTTCAACGTCAGCTTCGCACACTACGCCGGCTACATCACCGTCGAGGAGAACGCCGGGAGAACACTCTTCTACTGGTTCATTGAGGCTCTCGAAGATCCTCATTCCAAGCCCCTGGTTCTATGGCTCAATGGAGGACCTGGTTGTTCATCCATTGCTTTCGGACAGTCCGAGGAAATTGGACCCTTTCATATAAATCCAGATGGCAAGACTCTTCATCCCAATCCCTATTCTTGGAACCGAGTTGCCAACATTCTTTTTCTTGACACTCCTGTTGGGGTTGGATTTTCATATTCAAATAACGGATCCGAGCTGCTGAACAATGGCGATAATAGGACAGCTAAGGACAATTTAGTATTTCTGTTGAAGTGGTTTGAGCGTTTCCCTCAATACAGAAGTAACGACTTTTTAATTAGTGGTGAGAGCTATGCAGGGCATTACGTTCCTCAACTTAGCCAAGCTATTGTTAAGTACAACTCAGCCACTAAAGAACAGGCTATAAATCTGAAAGGTTTCATGGTAGGGAATGCTCTGACGGATGATTATCATGATCAATTAGGGATGTTCGAGTTTATGTGGTCAAGTGGTTTGATTTCGGATCAAACATACAAGCTTTTGAACCTACTTTGTGATTTTGAGTCAGTTGAGCACCCATCACATTCATGTGAAAACATTTGGGAAATTGCTGATAAAGAACTTGGAAATATAGATCCATACAGTCTGTTTACACCACCATGCCATGCCAATGTTAGTCAGTTAAGTCGGCTGGTGAGAAGAAAGAATAGAATTGGTAGACTCGGTCTCAGTACAGAGTATGATCCATGCACTGAAAGGCACTCCATTGTATACTTCAATCGACCTGAGGTCCAAACAGCTCTTCACGTTGATCTAGATCATAAGCCTGCCACATGGGAGACCTGCAGTGATGTGGTATATACAAACTGGAAGGATTCTCCAAGATCAGTGCTCGATATTTATCATGAACTTATTGGAATGGGACTGAAGATATGGGTGTTCAGTGGTAATACGGACGTGGTAATACCTGTGACGTCTACTCGCTATAGCATAAGTGCTCTGAAACTCCCAACCTTGAGTCCTTGGCGTGCATGGTACGATGATGGGGAGGTTGGAGGATGGACCCAAGAATATGCTGGGCTTACGTTTGTGATTGTAAGGGGTGCAGGGCATGAAGTTCCTTTGCATAAACCAAAACTTGCTCTCACACTCGTCCAAACCTTCTTGGCAGGAACATCAATGCCCAATCTTGACTTACTCAGCACCTCTTGA	1419	0.4545	MAQSGSGFLCFATLLLCSAFATSFSTDPPLLQQHKDRVGRLPGQNFNVSFAHYAGYITVEENAGRTLFYWFIEALEDPHSKPLVLWLNGGPGCSSIAFGQSEEIGPFHINPDGKTLHPNPYSWNRVANILFLDTPVGVGFSYSNNGSELLNNGDNRTAKDNLVFLLKWFERFPQYRSNDFLISGESYAGHYVPQLSQAIVKYNSATKEQAINLKGFMVGNALTDDYHDQLGMFEFMWSSGLISDQTYKLLNLLCDFESVEHPSHSCENIWEIADKELGNIDPYSLFTPPCHANVSQLSRLVRRKNRIGRLGLSTEYDPCTERHSIVYFNRPEVQTALHVDLDHKPATWETCSDVVYTNWKDSPRSVLDIYHELIGMGLKIWVFSGNTDVVIPVTSTRYSISALKLPTLSPWRAWYDDGEVGGWTQEYAGLTFVIVRGAGHEVPLHKPKLALTLVQTFLAGTSMPNLDLLSTS*	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g2024	472	Gene3D	alpha/beta hydrolase	33	292	IPR029058	-
	Pvu9g2024	472	Gene3D	-	366	460	-	-
	Pvu9g2024	472	Gene3D	-	319	357	-	-
	Pvu9g2024	472	Pfam	Serine carboxypeptidase	42	459	IPR001563	GO:0004185\|GO:0006508
	Pvu9g2024	472	ProSitePatterns	Serine carboxypeptidases, histidine active site.	430	447	IPR033124	GO:0004185
	Pvu9g2024	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	119	131	IPR001563	GO:0004185\|GO:0006508
	Pvu9g2024	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	132	142	IPR001563	GO:0004185\|GO:0006508
	Pvu9g2024	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	168	193	IPR001563	GO:0004185\|GO:0006508
	Pvu9g2024	472	PRINTS	Carboxypeptidase C serine protease (S10) family signature	430	443	IPR001563	GO:0004185\|GO:0006508
	Pvu9g2024	472	ProSitePatterns	Serine carboxypeptidases, serine active site.	182	189	IPR018202	GO:0004185
	Pvu9g2024	472	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	9	466	IPR001563	GO:0004185\|GO:0006508
	Pvu9g2024	472	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 29	9	466	-	-
	Pvu9g2024	472	SUPERFAMILY	alpha/beta-Hydrolases	38	463	IPR029058	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g2024	Pvu-Chr9	29033993	29040566	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g2024	377	463	Calmodulin-binding Proteins	AT2G22960	27.273	4.88e-09	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g2024	K16297		-	gmx:100805227	827.78