Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2023 ATGGGTTTGGGAGTGTTGGGTTCTGTTCTAGTTCTGACACTCTTCTTCAAGCACTTAGCATCCCAGCAACCAAACACTGATGATTTCCTTGTGTCTGAGTTTTTGAAGAAGATGGGCTTAGCATCCTCCCAGGTCTACAACTTTTCTGCTTCTGTTTGTTCATGGCAAGGGGTTTCATGTGATGCCAAGAGAGAACATGTTATTGGGTTAGTCTTTTCTGGCATGGACCTTTCTGGTCCTGTTCCAGACACCACCATAGGCAAGCTCACCAAGCTTCGATCTTTGGACCTTAGCCACAACAAAATCACCGACTTGCCTTCTGATTTCTGGAGTTTTAGCATGCTCAAGAACCTTAACCTCTCCGGCAATCAGATTTCTGGTTCATTGACTAACAACATAGGAAACTTTGGTTTGCTAGAAGTATTGGACTTGTCCAGCAACAATTTCTCTGGGGAAATTCCTGAAGCTATTAGTTCCCTCGTGAGTCTGAAAGTCATCAAACTTGACCACAACCGGTTTGAGCAAAGAATACCTTCTGGGATTCTTGAGTGTCGTTCTCTTGTTTCAATTGATCTTTCTTCAAATCGGTTAAGTGGGACAGTTCCGGATGAGTTTGGTGCTGCTTTTCCTAATCTCATTACCTTGAACCTTGCTGGGAATAGTATTAATGGCAGTGATTCTGATATTTCTGGGTTGAAGTCCATTGTGAGTCTCAACATATCTGGAAATTCCTTTCAGGGTTCTGTGATGAAGTTATTTCAGGGAAGGCTTGAGGTCATGGATCTTAGAAGAAACCATTTTGAAGGTCGCATTTCTCAGGTACATTCCATCTCTAGTTACAATTGGTCTCATTTAGTTTATCTTGACTTGTCAGAGAATCAGCTAGATGGGGAGATTTCCCAAAATTTTATTGAATCCAAGAATCTGAAGCACCTTAATCTTGCCCACAATAGATTTAGCAGACAGAAATTCCCCAAGATTGAAAAGCTATCTGGATTGGAATACCTGAACTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTGAAATCTCACAACTTCGTAATTTGAGTGCACTTGATGTTTCTATGAACCATCTTACAGGAAAAATTCCTTTACTGAACAATACAAACCTTCAAGTTCTTGACCTTTCAAACAACAATCTGAGCGGAGATGTCCCATCATCGGTCATAGAGAAACTTCCTTTAATGGAAAAATACAACTTCTCTTATAACAACTTATCCTTCTGTGCTTTGGAAACCAAATCAGCTATCATCCAAAGAGCATTTTATGGATCAGTGAACAGTTGCCCTATTGCTGTAAAGCCAAGTCTTCCAAAAAAAAGAGCCACTGAAAACAAGGGAATGAAGCTAGCTCTAGCATTGACCTTCTCAATGATCTGCTTGATTGCTGGGCTTATGCTTCTAGCTTTTGGTTGCCTTAAGAAAACAAAACCATGGCCTGTTAAACAAACTTCATACAAAGAAGAACATAACATATCAGGTCCCTTTTCATTCCACACAGATTCAACCACTTGGGTGGCTGATGTTAAACAAGCAACATCCGTCCCAGTGGTAATCTTTGACAAGCCACTGTTAAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGGAAATTTGGGCCTGTTTATAGAGGATTTCTACCAGGTGGTATTCATGTAGCAGTTAAAGTACTGGTGGTTGGATCCACTCTTACAGATAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGAAGAATAAAGCATCCCAATCTTGTTCCTCTAACCGGATACTGTGTAGCTGGGGATCAGCGGATTGCTATATATGACTACATGGAGAATGGAAACTTACAAAATTTGCTTTATGACTTGCCACTTGGTGTTGTTCTTCAAAGTACAGATGATTGGAGCACAGATACATGGGAAGAAGATGGCAGTGATGGGATCCAAAATGCTGGATCAGAAGGAGGCCTCACAACTTGGAGATTTCGCCATAAAATTGCACTCGGCACTGCAAGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCAATCATTCACAGAGATCTTAAAGCTAGCAGTGTATATTTGGACTATAACTTGGAGCCAAGACTTTCAGATTTTGGGTTGGCTAAGATTTTTGGGAGTGGCTTGGATGAGGAGATTGGACTTTGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTCTACACCTCAACTCCAAAATCAGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTATCTGGGAAGAAGCCTGTTGGAGATGATTATCCTGATGTGAAAGAAGCAACTTTGGTTAGTTGGGTGAGAGGGTTAGTGAGAGAGAACAAAGCTTCAAGAGCCATTGATCCAAAAATTCATTACACTGGAGCAGAAGAGCAAATGGAGGAGGCCCTTAAGATTGGTTATCTCTGCACTGCTGAACTTCCTTCCAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACCTTCTCCTCATTAG 2568 0.4139 MGLGVLGSVLVLTLFFKHLASQQPNTDDFLVSEFLKKMGLASSQVYNFSASVCSWQGVSCDAKREHVIGLVFSGMDLSGPVPDTTIGKLTKLRSLDLSHNKITDLPSDFWSFSMLKNLNLSGNQISGSLTNNIGNFGLLEVLDLSSNNFSGEIPEAISSLVSLKVIKLDHNRFEQRIPSGILECRSLVSIDLSSNRLSGTVPDEFGAAFPNLITLNLAGNSINGSDSDISGLKSIVSLNISGNSFQGSVMKLFQGRLEVMDLRRNHFEGRISQVHSISSYNWSHLVYLDLSENQLDGEISQNFIESKNLKHLNLAHNRFSRQKFPKIEKLSGLEYLNLSKTSLIGYIPAEISQLRNLSALDVSMNHLTGKIPLLNNTNLQVLDLSNNNLSGDVPSSVIEKLPLMEKYNFSYNNLSFCALETKSAIIQRAFYGSVNSCPIAVKPSLPKKRATENKGMKLALALTFSMICLIAGLMLLAFGCLKKTKPWPVKQTSYKEEHNISGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVVLQSTDDWSTDTWEEDGSDGIQNAGSEGGLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDLKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIGLCSPGYVPPEFSQPEFYTSTPKSDVYCFGVVLFELLSGKKPVGDDYPDVKEATLVSWVRGLVRENKASRAIDPKIHYTGAEEQMEEALKIGYLCTAELPSKRPSMQQIVGLLKDIEPSPH* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2023 855 Gene3D Ribonuclease Inhibitor 180 252 IPR032675 -
Pvu9g2023 855 SMART LRR_typ_2 160 184 IPR003591 -
Pvu9g2023 855 SMART LRR_typ_2 330 354 IPR003591 -
Pvu9g2023 855 SMART LRR_typ_2 89 111 IPR003591 -
Pvu9g2023 855 SMART LRR_typ_2 377 400 IPR003591 -
Pvu9g2023 855 SMART LRR_typ_2 112 136 IPR003591 -
Pvu9g2023 855 SMART LRR_typ_2 209 232 IPR003591 -
Pvu9g2023 855 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 852 - -
Pvu9g2023 855 Pfam Protein tyrosine and serine/threonine kinase 551 845 IPR001245 GO:0004672|GO:0006468
Pvu9g2023 855 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Pvu9g2023 855 Gene3D Ribonuclease Inhibitor 253 325 IPR032675 -
Pvu9g2023 855 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 852 - -
Pvu9g2023 855 Pfam Leucine Rich Repeat 378 396 IPR001611 GO:0005515
Pvu9g2023 855 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Pvu9g2023 855 SUPERFAMILY Protein kinase-like (PK-like) 532 849 IPR011009 -
Pvu9g2023 855 ProSiteProfiles Protein kinase domain profile. 547 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g2023 855 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Pvu9g2023 855 SMART LRR_sd22_2 376 403 - -
Pvu9g2023 855 SMART LRR_sd22_2 89 120 - -
Pvu9g2023 855 SMART LRR_sd22_2 306 332 - -
Pvu9g2023 855 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Pvu9g2023 855 SUPERFAMILY L domain-like 43 417 - -
Pvu9g2023 855 Pfam Leucine Rich repeat 283 298 IPR001611 GO:0005515
Pvu9g2023 855 Gene3D Ribonuclease Inhibitor 326 433 IPR032675 -
Pvu9g2023 855 Gene3D Ribonuclease Inhibitor 30 179 IPR032675 -
Pvu9g2023 855 Gene3D Transferase(Phosphotransferase) domain 1 658 854 - -
Pvu9g2023 855 PRINTS Leucine-rich repeat signature 92 105 - -
Pvu9g2023 855 PRINTS Leucine-rich repeat signature 376 389 - -
Pvu9g2023 855 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Pvu9g2023 855 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2023 Pvu-Chr9 28996271 28998838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2023 67 851 Receptor kinase-like Gene Family AT4G39400 33.252 2.87e-110 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Pvu9g2023 PK_Tyr_Ser-Thr 1.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2023 - - gmx:100807051 1497.64