Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2018 ATGCCAGATTTAGGGAACTTGTCTCTGTCTTCGACTCTCACACTCTCTCACTGCTCCTCCGATGTCGCAGACGCTCCCGTCAAAACCCTACCCGATGCCTTCGTTTCGGAGCCTGCCTTCGAGCCTCGGGTTATGAAGCGCACCCGCGGCTCCCTCGATCGGGTCAAGAAGCCCGCCTCCGACAAAACCTTCCAGGATCGCCTCAAAGATCCCTTCTCTCATCCATTTCTTGTTGGCGCTCCCAAGATGGAGGAATGCTGTTTTTGCCGCCATTTTATTTACCCTGGTGAGGAGGTAGTGTGCTCGGTTCGCGGATGTGACGCGCGCTTCCATTCTGAATGTGTAAAAGATTCTGTTGGAGCTACCAGTCTGAAAAAATACAAGTGTCCACAGCATGTATGCTTCATTTGCAAGCAAAAAAAGCACTTGAGGTGTGTACGATGTAAAATTGCGTTCCATAATAAATGTGCACCATGGCCAGATGCAGTGTTGCTGATAAAAGATCATCCTGGTCTAGCTGTTTGCTGGAGGCATCCTTCTGATTGGCGCTTGGATAGGAAGCCTGATGCTTCAACAAGTGACATTTCGGAAATATTTTGTGGCTTGCCTCTTCCATTTATCAGTGAGGAGTTTAAGATCGATTCCTCCTGGAAAGACATGGACAGTAAGATGGAGCAGCCACCACCATATGTACACATAAGACGCAATATATACTTAGTAAAGAAGAAACGTAGTAATGTGGATGATGGTGCAGGGTGCACCAGTTGCAGTTCTACATGTTCTGATGATTGTGTGTGCAGGGTTCAATGCATAAGTTGCTCAAAAGCATGTCGCTGCTCTGAAAATTGCAATAATCGTCCATTTCGCAAGGATAAAAAGATCAAGATAGTCAAGACTGAACATTGTGGATGGGGAGTGGAGGCCGCCGAAACCATTGATAAAGGTGGATTTATAGTTGAGTATATTGGCGAAGTAATTGACGATGCTTTATGTGAGAAGAGGCTCTGGGACATGAAATACATGGGTGTACATAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATCGATGCAACTTTCAAAGGAAATACTTCACGCTTTTTGAACCATAGCTGCGATCCCAACTGTGTTTTGGAAAAGTGGTTAGTGTCAAATACCATCAAACTCATCCTAGGCTGCATTATTTTCTCACTCTTCAGAGATTAA 1209 0.4508 MPDLGNLSLSSTLTLSHCSSDVADAPVKTLPDAFVSEPAFEPRVMKRTRGSLDRVKKPASDKTFQDRLKDPFSHPFLVGAPKMEECCFCRHFIYPGEEVVCSVRGCDARFHSECVKDSVGATSLKKYKCPQHVCFICKQKKHLRCVRCKIAFHNKCAPWPDAVLLIKDHPGLAVCWRHPSDWRLDRKPDASTSDISEIFCGLPLPFISEEFKIDSSWKDMDSKMEQPPPYVHIRRNIYLVKKKRSNVDDGAGCTSCSSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKDKKIKIVKTEHCGWGVEAAETIDKGGFIVEYIGEVIDDALCEKRLWDMKYMGVHNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWLVSNTIKLILGCIIFSLFRD* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2018 402 ProSiteProfiles SET domain profile. 292 402 IPR001214 GO:0005515
Pvu9g2018 402 SUPERFAMILY FYVE/PHD zinc finger 81 141 IPR011011 -
Pvu9g2018 402 SMART set_7 292 402 IPR001214 GO:0005515
Pvu9g2018 402 Gene3D SET domain 205 399 IPR046341 -
Pvu9g2018 402 SMART PHD_3 85 133 IPR001965 -
Pvu9g2018 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 181 IPR013083 -
Pvu9g2018 402 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 390 IPR025787 -
Pvu9g2018 402 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 54 386 - -
Pvu9g2018 402 Pfam SET domain 303 381 IPR001214 GO:0005515
Pvu9g2018 402 PANTHER SET DOMAIN PROTEINS 54 386 - -
Pvu9g2018 402 ProSiteProfiles AWS domain profile. 249 292 IPR006560 GO:0005634|GO:0018024
Pvu9g2018 402 SUPERFAMILY SET domain 216 388 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2018 Pvu-Chr9 28945854 28949453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2018 273 384 C2H2 Transcription Factor Family AT2G23740 38.400 1.26e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu9g2018 SET 8.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2018 - - pvu:PHAVU_009G195400g 835.869