Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1981 CTTGAACGATGTGATATATGTGGTGCTCGTGGTTTCGTAGAAAAAGTTGTTACTTGCTCTAAATGCAGCGTGATTCGACATGCTTATTGCATTCAAATTAATACCACAATAATTCCTGAAGACTGGCTCTGTGAGACTTGCCAATCCAAGCATGATTCAACTTCACAACGTAAAGTGAATCAGGTTGTTGGTTCGTGGGCTTCTAAAAGGAAACCATCTGTCAGAGGAGGAAAAGTGAAGTACCTTGACTTGGATGAAGTCATTAGACTTTCTTCTGGGAAGGCTTCGGCTGTGTCAAAAAATGTTATTCCCAAGATTCCCTCCCTGTCTCCAAAAGCAAATCTTCCCATATTACCTCCTAAAGTACTTGGAAAGCTTCCAAGAAATGATGAAGTACGCAAGAAGCCAATGACTAACCAACATGCTTCTTGCTCATTATTTAAAGGTGGTGAACATAGCGACGATGCTGAGTGTAACAGGTCTAATATGGAAAAAAATGACCCTCAGAGTATTCAGAAAAACTTGAACCTTTATCGTAAATTTTTACCCTCCTCAATTCATGCTTGGAGGGGTCAGATCCAAATTCTTCAAACAGCTTCATCTTGGATACTTTATGATGGGTTTGAGGCCCAACCACCATGCATTGTTAACAAGAAAGCATATAAATTTTCAAGAGAAATGCCATCAGTCCTGCACCTGGAGGCATTTCCTGCATTGAATGTCTTGACTAACATATTCCCAGATGAGTCACCTAAACTTCAGGATATTGCATTGTACTTCTTTCCATCAGAATGTACTGATAGAAAGGACCTGAATGACATATTGAAGTTTATGAATGACGAGAAAGCAATGCTAAGAAGTTTTATTGATGGAGTGGAGTTGCTAGTATTTACCTCAAATCAACTTGACATAGACTCAAGGGGTGTTATTGCTGAAGTAAAGGGTGGACATTTCCTATGGGGAGTCTTTCGTCAATTTAAAATTGATAAAGCTATTCAAAGAGTACCTGCCATGGAGCCAGTTGATATGGAAATTGATATGATTGGAGGAAAAGATGTGGAGGGAAAAGTTGATCACTTTCAGAAACATAAACCCAAGAGTGCCTCTGATGGAGTATAA 1119 0.3932 LERCDICGARGFVEKVVTCSKCSVIRHAYCIQINTTIIPEDWLCETCQSKHDSTSQRKVNQVVGSWASKRKPSVRGGKVKYLDLDEVIRLSSGKASAVSKNVIPKIPSLSPKANLPILPPKVLGKLPRNDEVRKKPMTNQHASCSLFKGGEHSDDAECNRSNMEKNDPQSIQKNLNLYRKFLPSSIHAWRGQIQILQTASSWILYDGFEAQPPCIVNKKAYKFSREMPSVLHLEAFPALNVLTNIFPDESPKLQDIALYFFPSECTDRKDLNDILKFMNDEKAMLRSFIDGVELLVFTSNQLDIDSRGVIAEVKGGHFLWGVFRQFKIDKAIQRVPAMEPVDMEIDMIGGKDVEGKVDHFQKHKPKSASDGV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1981 372 Pfam PHD-finger 3 49 IPR019787 -
Pvu9g1981 372 PANTHER - 4 359 - -
Pvu9g1981 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 71 IPR013083 -
Pvu9g1981 372 PANTHER ZINC ION-BINDING PROTEIN 4 359 - -
Pvu9g1981 372 ProSiteProfiles Zinc finger PHD-type profile. 1 50 IPR019787 -
Pvu9g1981 372 SMART PHD_3 3 48 IPR001965 -
Pvu9g1981 372 SUPERFAMILY FYVE/PHD zinc finger 3 53 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1981 Pvu-Chr9 28394583 28400172 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu9g1981 PHD 5.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1981 - - pvu:PHAVU_009G1919001 759.985