Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1970 ATGTCATCATGCTCTCCAATAGAGTTAGAGACTAAAATGTCACAATCAAGTATGGATTTGATTGCAATAGGTGGACAGGATGGTGGAAATACAATATCATACTCTCAAAGAGCAATGGAAGTTGAAACAGTGGACGTTGCTGTGAATTTGAATGCAAGTCATGGACAGGGTGGTGGACAAGGTGAAATCACAACATTAGGCAATCCAAGTGCAATGGAAACTAAAATGACTGTCTCAAATGAGGAATTCACTGCTGGAAACACAACATTAAGCACTCCAAGAGCAATGGACACTGTGAATGTTGAGTCAAGTGAAGGCTTGAGTGCAAGACATGGACAGGGTTGTGGACAAGATGAAACCATAAGATTTGGCACTCCAAGAGAAATGGAGACCCAAATGATAGTCTCAAGTGAGGATTTGACTGTTGGAAAGACCTCACTAAGCACTCCAAGAGCAATAGAGATGGTAAGGGTTGAGTCAAGTGGGGATATGATTGCTGGAAAGGCAACATCATGCACCACTCCAAGAGCAATGGAGATGGAATTGGTGGATGCAGGTGGAGATTCAATTGCAGAACAAAAGCAGGATCACGGACAAGGCAACAAGACAAAACTCAGCATTTCAAGGGAAATAGAGACAGAAACAGTGGTCTTTAGGGCTGATTTGATGGCAACGCCTAAACAAATCTTTGGAAAAGGTGGAACATCAGGCACTCCAAGAGCAGTGAAGAATAAAATGGCAGAGACAAGCATGGAGCCAATTGCTAGATTCCAAAGGCTTTGTGGACGAGGTGTAAGAGAAAAAGGTCCATCATCACCTGAAGGAAAAGCAACAAACAAGAAAAGAGATTCACCTTTTCCTGAAAGAGCAAGGTCAGCTAAACGAGGTGCAAGAAGAGGCATGCAGGGTACATGGAACCATCCTACTCAGAAGAGGGCAAGAATAAGAGAAGAAAACAAGGAAATTTGTGATCCCAGACCAAGCTCAATGATGGAAGAAGGTTGGCCATCACCTGAAAGACAAGCAGCAAACAACAAAAGAGGTTCACCTTTGCTTGAAAGAGTTAGGTCATGTAAACGAGGCACAAAAAGGGGCATGCAGGGTACATCAAGCCAACCTAGTCAGAAGAGGGTAAGACTAGTAGAACAAAACAAAGAAGTTAGTAATCCTGGACCAAGCTCAATAATGGAAAATGGTCCATCATCACTTGAAAGACAAGCAGCAAACAAGAAAAGAGGTTCACCTTCATCTGAAAGAGTAAGGTCATGTAAGAAAAGCACTTGTTTTTTATGGTTGATAGACTCTAGGATTATTAAGAAAGATGAACGAGTAAGCTATAAGAGTGCCACAATGAAAAAGGCATTAGCAGGAAGGATTACTAGGGGTGGAATTCTCTGCAGCTGTTGCCAGGAGGAGATATCAATGTGGACCTTTGAAAAGCATGCTGGAAGTGATCTTAGACAGCCCTATAAACATATTTACATTCACAGAAAACATAAATCCCTCCGAAAATGCCTGATTGAAGCTTGGCAACATGCCCGGGAACAAAAGCGTCGGCGCATGTTTTTGTATGTGCCGAAAGAAACTGATGCAGACCAAAATGATGATATTTGTTCAGTCTGTGGTGATGGGGGAGACTTAATCTGTTGTGACAAGTGTCCTTCCACATATCATCTATCTTGCCTGAATATAGAGACGGTACCCCAAAATGATTGGTTTTGTCCATACTGTGTATGCAAACACTGTGGGCTGGTTGTGAACCTGGTTGTTGATAAAAAAGAATACTATGAGAAAAAAGAAGGCTTCGAGTGCTCCCAATGTGACAAGAAGTATCATTGGGAGTGCTTTGAAAAATCTGAAAAAGAATCCTCAAGACAAACTCCAGACTTTAACCCTTCAAGATCATATTGTGGGCAAGGTTGCCAACGGATACATGAGAAAATGGGAGTATATCTCGGAATCCGAAATGATTATTCGGCAAAATACTCTTGGAGGGTTATCCGCGTAATGGAGACATACAAGAAGAATTCTGCAGATATGAATCTATTCTTAGAAAACAATTCAAGGGTTGCTGTTTCTTGGATGTTAATGAATGAAGCTTTTAAGACAATAACTGACAGGAAAACGGGCATCAATGTGGTTCGAAGTATAGTTTACAGCTGCAAGTCAAACTTAAACAGGATTGATTTTAACCGTTTTTATATGTTTGTTCTGGAGGAAGATGATGCGATCATTGCTGCAGCTTCTATAAGATTTCACGGGACAAGGATTGCAGAAATGCCATTTATTGTAACAGAAAGGGCATACAGGGGCCAAGGAGTTTGCCAGGAATTAATGAGGGTGATTGAATCGTTCCTATGCAATGTTAAAGTCGAGAATTTGATAATTCCATCTGCTGTGGAGACTTGTGATATGTGGAAGCGCAAGTACAACTTTACTGAGGTGAGTGAAGAGCTGAAGAAAGAAATATCCTCCTATAATATTGTGATGTTCCCTTGTGCTGTAAGACTGTACAAGGACTTGTCAGCAAGCATAGCAGACATTAAGAATGATCTGGAACCACAAACAGAGCATGCAGAGGTTACTACTAGACTTGAACATGGATCCTCACCAGGAAGATTAGAAGAAGTAAAAGAGTTGTAG 2643 0.4128 MSSCSPIELETKMSQSSMDLIAIGGQDGGNTISYSQRAMEVETVDVAVNLNASHGQGGGQGEITTLGNPSAMETKMTVSNEEFTAGNTTLSTPRAMDTVNVESSEGLSARHGQGCGQDETIRFGTPREMETQMIVSSEDLTVGKTSLSTPRAIEMVRVESSGDMIAGKATSCTTPRAMEMELVDAGGDSIAEQKQDHGQGNKTKLSISREIETETVVFRADLMATPKQIFGKGGTSGTPRAVKNKMAETSMEPIARFQRLCGRGVREKGPSSPEGKATNKKRDSPFPERARSAKRGARRGMQGTWNHPTQKRARIREENKEICDPRPSSMMEEGWPSPERQAANNKRGSPLLERVRSCKRGTKRGMQGTSSQPSQKRVRLVEQNKEVSNPGPSSIMENGPSSLERQAANKKRGSPSSERVRSCKKSTCFLWLIDSRIIKKDERVSYKSATMKKALAGRITRGGILCSCCQEEISMWTFEKHAGSDLRQPYKHIYIHRKHKSLRKCLIEAWQHAREQKRRRMFLYVPKETDADQNDDICSVCGDGGDLICCDKCPSTYHLSCLNIETVPQNDWFCPYCVCKHCGLVVNLVVDKKEYYEKKEGFECSQCDKKYHWECFEKSEKESSRQTPDFNPSRSYCGQGCQRIHEKMGVYLGIRNDYSAKYSWRVIRVMETYKKNSADMNLFLENNSRVAVSWMLMNEAFKTITDRKTGINVVRSIVYSCKSNLNRIDFNRFYMFVLEEDDAIIAAASIRFHGTRIAEMPFIVTERAYRGQGVCQELMRVIESFLCNVKVENLIIPSAVETCDMWKRKYNFTEVSEELKKEISSYNIVMFPCAVRLYKDLSASIADIKNDLEPQTEHAEVTTRLEHGSSPGRLEEVKEL* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1970 880 MobiDBLite consensus disorder prediction 262 419 - -
Pvu9g1970 880 MobiDBLite consensus disorder prediction 269 295 - -
Pvu9g1970 880 CDD NAT_SF 735 786 - -
Pvu9g1970 880 ProSiteProfiles Zinc finger PHD-type profile. 535 580 IPR019787 -
Pvu9g1970 880 PANTHER PHD FINGER FAMILY PROTEIN 338 843 - -
Pvu9g1970 880 SUPERFAMILY FYVE/PHD zinc finger 528 583 IPR011011 -
Pvu9g1970 880 MobiDBLite consensus disorder prediction 363 378 - -
Pvu9g1970 880 Gene3D - 713 830 - -
Pvu9g1970 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 525 601 IPR013083 -
Pvu9g1970 880 MobiDBLite consensus disorder prediction 386 410 - -
Pvu9g1970 880 Pfam Tify domain binding domain 457 509 IPR032308 -
Pvu9g1970 880 CDD PHD2_CHD_II 538 577 - -
Pvu9g1970 880 Pfam PHD-finger 537 579 IPR019787 -
Pvu9g1970 880 MobiDBLite consensus disorder prediction 857 880 - -
Pvu9g1970 880 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 338 843 - -
Pvu9g1970 880 SMART PHD_3 537 578 IPR001965 -
Pvu9g1970 880 SMART PHD_3 579 642 IPR001965 -
Pvu9g1970 880 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 726 801 IPR016181 -
Pvu9g1970 880 MobiDBLite consensus disorder prediction 310 327 - -
Pvu9g1970 880 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 695 842 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1970 Pvu-Chr9 28267316 28276260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1970 397 843 PHD Transcription Factor Family AT4G14920 39.648 1.28e-103 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu9g1970 TDBD 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1970 - - pvu:PHAVU_009G190800g 1767.28