Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1964 ATGGTGGGTGGGACTGTCTTTTCCGCTGCTTCAAATTTAACCACTTTGCTTTCCAACCAAACACCTCCTTCAGCCTCTCAGTCTATCGATTCTCTTTTCCACTCTTCTTCTTCTTCCCCTTTTTTCGGTTCAAGATCTATAGTGAGCTTTGGAGATGTTCAAGGGGGGAAAGGGTGCAACGAGTCGTTCTTCCTGCCTTATGATGATAATGGGGATGAGGACACGGACGAGTACTTTCATCAGCCTGAGAAAAAACGCAGGCTTTCCGTTGAGCAAGTGCAGTTTCTTGAGAAGAGCTTTGATGAGGAGAATAAGCTCGAACCCGAGAGAAAGATTCGGCTAGCTAAAGAACTCGGGTTGCAGCCGCGGCAGGTGGCGATTTGGTTTCAGAACCGCCGGGCGCGTTGGAAGACCAAGCAGATGGAGAAGGATTATGATTCCCTGCAGGCTTGCTATGATGATCTCAAGACCAACTATGATGATCTTCTCAGGGAAAAGGATAAACTCAAAGCTGAGGTAGCAAAGCTCACTGAGAAGGTGCTTGGGAGAGAAAAAATGGAGAAGGAGAACTTTGGAAAGGCTGAAACCAAGGGATATTTTCAGGAGCCGGTGCAGAAGTCTATGATTGATTCAGCTTCTGAGGGTGAAGGGTCCAAAGTGTCCATCGTAGCTTGTAAACGGGAAGACATTAGTTCAGCGAAGAGTGAGATGTTTGATTCATCAGAAAGCCCACGTTACACTGATGGAGTGCACTCTGCTCTCCTTGAGACCGGTGACTCTTCTTATGTGTTTGAACCTGATCACTCTGATGTGTCTCAGGATGAAGGAGATAACCTGAGCATGACGCTTTTGCCTCATTACATGTTTCCCAAACTTGAAGATGTTGGTTACTCCGACCGGCCTCATAGTTCATGTCATTTTGGAATTCCTGAGGAAGATCAAGCCATTTGGTCTTGGTCTTACTGA 966 0.4658 MVGGTVFSAASNLTTLLSNQTPPSASQSIDSLFHSSSSSPFFGSRSIVSFGDVQGGKGCNESFFLPYDDNGDEDTDEYFHQPEKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQACYDDLKTNYDDLLREKDKLKAEVAKLTEKVLGREKMEKENFGKAETKGYFQEPVQKSMIDSASEGEGSKVSIVACKREDISSAKSEMFDSSESPRYTDGVHSALLETGDSSYVFEPDHSDVSQDEGDNLSMTLLPHYMFPKLEDVGYSDRPHSSCHFGIPEEDQAIWSWSY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1964 321 SMART HOX_1 82 143 IPR001356 GO:0003677
Pvu9g1964 321 CDD homeodomain 84 140 IPR001356 GO:0003677
Pvu9g1964 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 15 318 - -
Pvu9g1964 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 15 318 IPR045224 GO:0003700
Pvu9g1964 321 SUPERFAMILY Homeodomain-like 70 141 IPR009057 -
Pvu9g1964 321 Coils Coil 145 179 - -
Pvu9g1964 321 Gene3D - 87 133 - -
Pvu9g1964 321 Pfam Homeobox associated leucine zipper 139 180 IPR003106 GO:0006355|GO:0043565
Pvu9g1964 321 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Pvu9g1964 321 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Pvu9g1964 321 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Pvu9g1964 321 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Pvu9g1964 321 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Pvu9g1964 321 Gene3D - 134 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1964 Pvu-Chr9 28186663 28188944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1964 82 194 Homeobox Transcription Factor Family AT3G01470 63.717 5.25e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu9g1964 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1964 - - gmx:732618 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1993 3 40530932 40532793 Pvu9g1964 9 28186663 28188944 ECH
Pvu9g1964 9 28186663 28188944 Pvu9g1964 9 28186663 28188944 ECH