Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1960 ATGGAATCTAGCAACTTCAGTTTGCTCTTCTTTTACGTCATTTTTCTTGCTATACTCCCCACCCTTCAGGCTAACATAGGTCAGTTCGATCATGTATGGCATAGGCGATTAAAGGAAGCAAGGGAAGCTGCAAAACAGGCTTACAAGCCAAACCCCATGAAAGTTACCGCTGAATTCAATACACACGTCATGAGAGCGATGAAAGGGTCCAACAGCACGAGAAGGGGCTTGGGGAAAAAAAATGACGAATGCGAGGCAGCAAACCCCATTGACAAATGTTGGAGATGTGACCCAGATTGGGAGAAAAACCGCAAGAAGCTAGCAGATTGTGCGATTGGGTTTGGTCACGGCACAACCGGGGGGAAAGATGGGAAAATCTACGTGGTAGGCGACAATTCCGACAAGGACCTGGTGAACCCTAAACCAGGGACATTGAGACATGCAGTTATTCAGACAGAGCCACTGTGGATCATTTTTTCGCGAAACATGAACATTAGGCTCACTGCAGAGCTTCTCATAACGGATAACAAGACCATCGATGCACGTGGTGCCAATGTGCACATTCTAGATGGTGCCCAAATGACGATACAATTTGTGAAAAATATCATCATTCACGGATTGCACATCCACGACATTCAGCCAATTAGTGGTGGCCTCATAAGAGACTCCATGAGCCACTACGGAGTTCGCGCCATGAGTGATGGCGATGGGATTTCAGTGTTTGGATCAACACATATTTGGATTGATCATGTTTCCATGACCAATTGCTCTGATGGCCTCATCGATGTCGTTAGTGCATCAACGGCTGTTACCATCTCCAACTGCCATTTTGTCAAGCATAACGACGTTTTGTTATTCGGCGCCACTGATAGCTTCTCAAGAGATAAAGTGATGCAAGTGACTTTGGCTTTCAACCATTTTGGGAAAGGATTGGTTCAGAGAATGCCAAGGTGCAGATGGGGCTTCTTTCACATTGTTAACAACGACTACACTCATTGGCTAATGTACGCCGTAGGTGGCAGCCAGCAACCCACCATCATCAGCCAAGGAAACCGTTTTGTCGCCCCGAAAGACAGAAATGCAAAAGAAGTGACAAAAAGGGATTACGCTCCGGAAAGTGAGTGGAAGAATTGGAATTGGAGATCAGAGGGTGATTTATTCGAGAATGGAGCATTCTTTGTTGAGTCTGGGAAAAAAGTTACAAAATTTCCCAAGACAGACGCCAAAGCAGTGTCTGCTAAATCCGTAGCTTTTCTCACTAAAGATGCAGGTCCTATAAAATGTATTCCAAACAAGCCCTGCTGA 1305 0.4552 MESSNFSLLFFYVIFLAILPTLQANIGQFDHVWHRRLKEAREAAKQAYKPNPMKVTAEFNTHVMRAMKGSNSTRRGLGKKNDECEAANPIDKCWRCDPDWEKNRKKLADCAIGFGHGTTGGKDGKIYVVGDNSDKDLVNPKPGTLRHAVIQTEPLWIIFSRNMNIRLTAELLITDNKTIDARGANVHILDGAQMTIQFVKNIIIHGLHIHDIQPISGGLIRDSMSHYGVRAMSDGDGISVFGSTHIWIDHVSMTNCSDGLIDVVSASTAVTISNCHFVKHNDVLLFGATDSFSRDKVMQVTLAFNHFGKGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQQPTIISQGNRFVAPKDRNAKEVTKRDYAPESEWKNWNWRSEGDLFENGAFFVESGKKVTKFPKTDAKAVSAKSVAFLTKDAGPIKCIPNKPC* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1960 434 PANTHER PECTATE LYASE 18-RELATED 6 434 IPR045032 GO:0030570
Pvu9g1960 434 SMART amb_all 162 359 IPR002022 -
Pvu9g1960 434 Gene3D - 87 427 IPR012334 -
Pvu9g1960 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Pvu9g1960 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Pvu9g1960 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Pvu9g1960 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Pvu9g1960 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Pvu9g1960 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Pvu9g1960 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Pvu9g1960 434 PANTHER PECTATE LYASE 6 434 - -
Pvu9g1960 434 SUPERFAMILY Pectin lyase-like 88 410 IPR011050 -
Pvu9g1960 434 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Pvu9g1960 434 Pfam Pectate lyase 176 353 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1960 Pvu-Chr9 28158493 28160576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1960 1 434 Polysaccharide Lyase AT5G15110 53.390 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1960 K01728 - gmx:100801864 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0443 8 3752195 3754070 Pvu9g1960 9 28158493 28160576 ECH
Pvu2g0682 2 7639894 7642692 Pvu9g1960 9 28158493 28160576 ECH
Pvu9g1960 9 28158493 28160576 Pvu9g1960 9 28158493 28160576 ECH